Curator Dashboard

Software graph guided assembly for novel human leukocyte antigen allele discovery. Graph guided assembly for HLA haplotypes covering typing exons using high coverage whole genome sequencing data.Implemented in Java and supported on Linux and Mac OS X.

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• dkNET
• 4 years ago - by Anonymous

Software tool for precision HLA typing from next generation sequencing data.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Software tool for HLA typing based on whole exome sequencing data and infers alleles for three major MHC class I genes. Enables accurate inference of germline alleles of class I HLA-A, B and C genes and subsequent detection of mutations in these genes using inferred alleles as reference.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Software tool for fast and accurate HLA typing from short read sequence data. Iteratively refines mapping results at amino acid level to achieve four digit typing accuracy for both class I and II HLA genes, taking only 3 min to process 30× whole genome BAM file on desktop computer.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Software workflow for automatized spatio temporal plant positioning based on UAV images.

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• SciCrunch
• 4 years ago - by Anonymous

Web server that serves over million gene expression signatures processed, analyzed, and visualized from LINCS, GTEx, and GEO. Data and metadata search engine for gene expression signatures.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Web server for analysis and design of nucleic acid systems. Enables thermodynamic analysis of dilute solutions of interacting nucleic acid strands. Analysis and design of nucleic acid secondary structure for systems involving one or more species of interacting strands.

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• RRID
• 4 years ago - by Anonymous

Web service for RNA/DNA folding predictions including pseudoknots and entangled helices.Used for prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.

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• RRID
• 4 years ago - by Anonymous

Platform for global network of researchers to investigate role of human genetics in SARS-CoV-2 infection and COVID-19 severity. Provides results of three genome-wide association meta analyses that consist of patients with COVID-19 from studies across countries.

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• RRID
• 4 years ago - by Anonymous

Software for statistical approach to identify loci within genes that are both significantly enriched in slowly translated codons and evolutionarily conserved, and also co-translational protein folding model.

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• RRID
• 4 years ago - by Anonymous

Software for comprehensive quantitative measure of splicing impact of complete set of RNA 6-mer sequences by deep sequencing successfully spliced transcripts.

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• RRID
• 4 years ago - by Anonymous

Web tool for genomic HEXploring allows landscaping of novel potential splicing regulatory elements. Allows landscaping of splicing regulatory regions, provides quantitative measure of mutation effects on splice enhancing and silencing properties and permitts calculation of mutationally most effective nucleotide.

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• RRID
• 4 years ago - by Anonymous

Software tool for calculating and comparing synonymous codon usage and its impact on protein folding. Used to harmonize codon usage frequencies for heterologous gene expression. Codon usage calculator that evaluates relative usage frequencies of synonymous codons used to encode protein sequence of interest and compares these results to rigorous null mode.Evaluates synonymous codon usage patterns for any coding sequence from any fully sequenced genome.

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• RRID
• 4 years ago - by Anonymous

Software tool to calculate positional conservation for multiple sequence alignment. Used for calculation of positional conservation in protein sequence alignment.

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• RRID
• 4 years ago - by Anonymous

Open browser to inform therapeutics development for tracking SARS-CoV-2 single nucleotide variations, lineages, and clades using virus genomes on GISAID database while filtering by location, date, gene, and mutation of interest. can Provides information on which virus mutations are present in area during specific period by processing data on mutations found in viral genetic material collected worldwide from hundreds of thousands of people with COVID-19, which are hosted in existing online database.

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• RRID
• 4 years ago - submitted by Chong Han Ng

Software tool to find SNP sites from multi-FASTA alignment file. Can output results in multiple formats for downstream analysis.

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• RRID
• 4 years ago - submitted by Chong Han Ng

Software package for generation of pseudo long reads by using short reads of metagenomic sample and microbial reference genome sequences as input.

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• SciCrunch
• 4 years ago - by Anonymous

Laser scanning confocal microscope for multiplex imaging and analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID
• 4 years ago - by Anonymous

System for efficient transfection of a variety of hard-to transfect cell lines and primary cells. Using certified aluminium electrode cuvettes this single cuvette system is capable of transfecting various substrates in a low throughput format.

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• RRID
• 4 years ago - by Anonymous

Open source statistical package written in Python 3 and based mostly on Pandas and NumPy. Designed for users who want simple yet exhaustive stats functions.

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• RRID
• 4 years ago - by Anonymous