Curator Dashboard

Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software tool enables closed loop behavioral experiments using deep learning based markerless, real time posture detection.Closed loop behavioral experiment toolkit using pose estimation of body parts.

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• RRID
• 4 years ago - submitted by Samantha White

Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

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• RRID
• 4 years ago - submitted by Samantha White

Provides expertise and access to instruments for study of structures and interactions of biological macromolecules such as proteins, nucleic acids, lipids, and complexes. Facility supports both discovery based research and assay development for translational applications. Offers to use equipment independently or with the help of faculty who have expertise in each method.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open source software for customized and reproducible microscope control. Software Python package that enables control of micro-manager as well as development of customized experiments integrated with real-time image processing.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software package for MATLAB that makes motion correction, segmentation, signal extraction and dimension reduction, analysis, and visualization of calcium imaging data easy to implement. Open source toolbox for analysis of calcium imaging data.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software Python toolbox that makes fiber photometry data analysis intuitive and light on programming.Used to measure neural activity of freely behaving animals.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software tool as novel tracking algorithm that combines deep learning and background subtraction.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Statistical software platform for automated scoring of pain in mice.Software R package takes paw trajectory data in response to stimulus and provides automated scoring of pain.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software Matlab based tool to visualize and analyze multimodal datasets.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software Python pipeline for automated detection, pose estimation, and behavior classification in socially interacting mice.Used for pose estimation and behavior quantification in pairs of freely behaving mice.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software MATLAB based toolbox for automated quantitative analysis of ultrasonic vocalizations. Utilizes image processing libraries to detect USVs and computational vision and machine learning algorithms to classify detected USVs. Used for analysis of ultrasonic vocalizations from mice using computer vision and machine learning.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software R package for permutation test in linear model with nuisances variables.Used for permutation testing in regression, ANOVA, and comparison of signals.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth