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Showing 20 out of 26,971 Resources on page 325

NHP BIDS

Code for NHP-MRI e.g., Retinotopy, Curve-tracing, Figure-ground. Pipeline for processing of NHP MRI data.

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Chris Klink

SARS-CoV-2 network analysis

Software tool to predict human proteins that interact with SARS-CoV-2 proteins and trace provenance of predictions.

  • Resource
  • SciCrunch
  • 5 years ago - submitted by T M Murali

REsearchFish

Software tool to collect outcomes and outputs of research from web, external data sources and researchers themselves.

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Anita Bandrowski

TriKinetics DAMSystem3 Software

Software tool for data collection to upload output from set of activity monitors and periodically saves it in disk files on Macintosh or Windows PC. Part of TriKinetics Drosophila Activity Monitoring System.

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Edyta Vieth

Mouse Developmental Anatomy Ontology Browser

Browser for mouse developmental anatomy. Ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of Edinburgh Mouse Atlas Project (EMAP) in order to provide structured controlled vocabulary of stage specific anatomical structures for developing laboratory mouse.

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Monique Surles-Zeigler

Clinica

Open source software platform for reproducible clinical neuroscience.Set of automatic pipelines for processing and analysis of multimodal neuroimaging data, as well as tools for statistics, machine learning, and deep learning.

  • Resource
  • SciCrunch
  • 5 years ago - by Anonymous

University of Chicago Animal Resources Center Core Facility

Core assists investigators in performing their animal research while ensuring appropriate and humane care of all laboratory animals.

  • Resource
  • SciCrunch
  • 5 years ago - submitted by Edyta Vieth

PARASAIL

Software tool as multiple sequence alignement for global, local and semi global alignments.


FAMSA

Software tool as multiple sequence aligner. Algorithm for large scale multiple sequence alignments.Designed to produce rapid multiple sequence alignment of large protein families.


LEON BIS

Software tool for sequence alignments evaluation. Multiple alignment evaluation of sequence neighbours using Bayesian inference system. Used to distinguish sections in multiple sequence alignments that are conserved across whole family or within subfamilies, and should be useful for automatic, high-throughput genome annotations, 2D/3D structure predictions, protein-protein interaction predictions etc.


Anvi'o

Open source software analysis and visualization platform for microbial omics including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in integrated fashion through extensive interactive visualization capabilities.


University of Kansas Microscopy and Analytical Imaging Research Resource Core Facility

Core laboratory in Room 1043 in Haworth Hall at the University of Kansas Lawrence campus.Provides life and physical sciences and engineering users with wide spectrum of sample preparation tools and techniques and imaging technologies.Provides training for undergraduate, graduate students, postdoctoral researchers, faculty, staff, and industry collaborators.

  • Resource
  • SciCrunch
  • 5 years ago - submitted by Edyta Vieth

Papers with Code

Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics.

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Anita Bandrowski

Adobe InDesign

Software tool for layout and page design software. Used for print and digital media to create graphic designs with typography from Adobe Stock. Publishing software, graph arrangement.


TriKinetics: Drosophila Activity Monitoring System

System from TriKinetics for monitoring Drosophila activity. Includes hardware and DAMSystem3 Software for data acquision and DAMFileScan Software for scanning data for errors. Applied to behavioral activity experiments, including sleep deprivation analyses and general studies of hypoactivity and hyperactivity.


ScriptManager

Interactive GUI Java software package for analysis of high throughput genomic sequencing data.


Cocaine Biobank

Repository of biological samples from genetically characterized outbred rats that exhibit compulsive like escalation of cocaine self administration. Biological tissue bank originating from outbred rats (Heterogenous Stock rats) that have been characterized as vulnerable or resistant to cocaine addiction. Samples are available under three different conditions to maximize compatibility with wide range of applications, including generation of iPSC lines (slow freezing/LN2), histology/neuroanatomy (perfused), and molecular biology (snap-frozen).

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Anita Bandrowski

MLSBM

Software R package to Fit Bayesian stochastic block models and multi level stochastic block models using efficient Gibbs sampling implemented in Rcpp. Models assume symmetric, non reflexive graphs with unweighted, binary edges. Data are input as symmetric binary adjacency matrix, or list of such matrices.

  • Resource
  • RRID-Legacy
  • 5 years ago - submitted by Anita Bandrowski

network epistasis

Software tool to detect epistasis between SNPs along edges of gene-gene interaction network.

  • Resource
  • SciCrunch
  • 5 years ago - submitted by Héctor Climente-González

naturalsounds analysis

Software tool as source code for analyzing functional ultrasound data.