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Cell Annotation Platform
Centralized, community driven platform for creation, exploration, and storage of cell annotations for single cell RNA sequencing datasets.
- Resource
- RRID
- 4 years ago - submitted by Edyta Vieth
Epiviz
Software package as interactive visualization tool for functional genomics data. Interactive visual analytics for functional genomics data.
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- RRID
- 4 years ago - submitted by Edyta Vieth
CloudReg
Software automated, terascale, cloud based image analysis pipeline for preprocessing and cross modal, nonlinear registration between volumetric datasets with artifacts. Automatic terabyte scale cross modal brain volume registration.
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- RRID
- 4 years ago - submitted by Edyta Vieth
BRAIN Initiative Cell Atlas Network
Provides molecular and anatomical foundational framework for study of brain function and disorders.Comprehensive Center on Human and Non-Human Primate Brain Cell Atlases with goal to build reference brain cell atlases that will be used throughout research community.
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- RRID
- 4 years ago - submitted by Edyta Vieth
Cell Type Knowledge Explorer
Software application to examine multimodal data from thousands of cells across 3 mammalian species.
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- 4 years ago - submitted by Edyta Vieth
CellLocator
Open source and multi-platform pinning software tool to facilitate mapping samples into common 3D spaces. Desktop application based on 3D Slicer that displays Allen Institute for Brain Science CCF or MNI atlas, color segmented by structure of brain, and allows user to create planar polyline annotation to facilitate mapping samples into corresponding atlas.
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- 4 years ago - submitted by Edyta Vieth
mBrainAligner
Software package provides cross modality image registration pipeline to support whole brain mapping projects. Contains three modules: (1) image preprocessing and global registration, (2) Coherent Landmark Mapping (CLM) based automatic registration, and (3) optional semi-automatic refinement.
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- RRID
- 4 years ago - submitted by Edyta Vieth
British Columbia Children's Hospital Research Institute Flow Cytometry Core Facility
Core provides equipment for flow cytometric analysis, full service cell sorting, training, and dissemination.
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- SciCrunch
- 4 years ago - submitted by Edyta Vieth
University of California at Los Angeles California NanoSystems Institute Advanced Light Microscopy and Spectroscopy Core Facility
Offers microscopy services, consultation, and support for application of novel microscopic and spectroscopic methods and advanced image analysis techniques for study of macromolecules, cellular dynamics and nano-scale characterization of bio-materials. Provides collection of customized biological fluorescence microscopes and small-animal imaging devices to study biological processes with high spatial and temporal resolution in whole organisms and in living cells down to single molecule detection level with nanometer accuracy. Located in basement and second floor of CNSI building, two optical suites designed to house microscopes with the required environment control (low vibration, air-filtered, air-conditioned and light-tight) and services. Services include Wide-field Fluorescence Imaging Microscopy (on a limited basis), Confocal One-Photon and Two-Photon Laser Scanning Microscopy, (both point scanning and spinning disk), Fluorescence Correlation Spectroscopy (FCS), Fluorescence Resonance Energy Transfer (FRET), microscopic and macroscopic Fluorescence Lifetime Imaging (FLIM) with Time-Correlated-Single-Photon-Counting (TCSPC) and Near-Infrared (NIR) Detection, Stimulated Emission Depletion laser-scanning microscopy (STED) (a super-resolution technique), both microscopic and macroscopic (small animal) spectral unmixing and laser capture microdissection.
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- SciCrunch
- 4 years ago - submitted by Edyta Vieth
National Cancer Institute of Mexico Advanced Microscopy Applications Unit Core Facility
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 26,2025. Imaging Core Facility located within National Cancer Institute of Mexico. Provides scientific and technical support in imaging and image analysis to any community. Imaging technologies in ADMiRA include: Confocal, Widefield, Super-Resolution, Lightsheet, FIB-SEM, Laser Microdisection, and Automated digital scanning.
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- SciCrunch
- 4 years ago - submitted by Edyta Vieth
OpenAlex
Open index of scholarly works, authors, venues, institutions, and concepts. Catalog of scholarly papers, researchers, journals, and institutions along with all the ways they are connected to one another.
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- SciCrunch
- 4 years ago - by Anonymous
Cell-type classification of the tumor single-cell gene expression data using the Subsemble supervised ensemble machine learning classifier - Supplementary Table 1-5
Cell-type classification of the tumor single-cell gene expression data using the Subsemble supervised ensemble machine learning classifier - Supplementary Table 1-5.
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- SciCrunch
- 4 years ago - submitted by David Chen
Cell-type classification of the tumor single-cell gene expression data using the Subsemble supervised ensemble machine learning classifier - Datasets for Classification Performance Benchmark
Datasets used for Subsemble cell type classification performance benchmarks.
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- SciCrunch
- 4 years ago - submitted by David Chen
Subsemble Cell Type Classifier
Supervised ensemble machine learning classifier. Classification performance benchmark scripts.
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- SciCrunch
- 4 years ago - submitted by David Chen
DataLyser
A software to display, record and data processing of physiological signals. DataLyser is custom-built software developed at Walter Reed Army Institute of Research, Silver Spring, MD. It is not copyrighted.
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- 4 years ago - by Anonymous
MDC and BIH Technology Platform Genomics Core Facility
Facility comprises Next Generation Sequencing, Single Cell Technologies and Data Management teams. Offers professional project counseling, library preparation, and sequence production support for Max Delbruck Center for Molecular Medicine and Berlin Institute of Health at Charite institutes in Berlin.
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- SciCrunch
- 4 years ago - submitted by Edyta Vieth
Histological E data Registration in rodent Brain Spaces
Open source, extendable, intuitive and interactive software platform for image visualisation and image registration.Python based GUI for histological E-data registration in brain space.
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- 4 years ago - submitted by Samantha White
DivBrowse
Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files.
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- 4 years ago - by Anonymous
Megadepth
Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.
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- SciCrunch
- 4 years ago - by Anonymous
nmrprocflow
An interactive 1D NMR spectra processing tool dedicated to metabolomics. This open source software provides a complete set of tools for processing and visualization of 1D NMR data, the whole within an interactive interface based on a spectra visualization.
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- RRID
- 4 years ago - submitted by Daniel Jacob
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