Curator Dashboard

Software tool as simple script to calculate N50/NG50 and auN/auNG.

• Resource
• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool for scaffolding with RNA-seq read alignments. Used for improving genome assembly with RNA sequencing data.

• Resource
• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool for scaffold long read assemblies with Hi-C data.

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• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool as hybrid method for correcting noisy long reads, such as the ones produced by PacBio sequencing technology. Used for correcting long reads by mapping short reads.

• Resource
• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool as kmer based error correction method for RNAseq data. Can also be applied to other types of sequencing data where read coverage is nonuniform, such as single cell sequencing. Used for error correction for Illumina RNAseq reads.

• Resource
• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Software tool for estimating k-mer coverage histogram of genomics data. Streaming algorithm for estimating frequencies of k-mers in genomics datasets.

• Resource
• RRID-Legacy
• 4 years ago - submitted by Brandon Pickett

Portal for traumatic brain injury data. Common Data Elements (CDEs) and Unique Data Elements (UDEs) for digital neuropathological data and clinical data that will be collected in all CONNECT-TBI center projects. Goal is to establish multi-center, digital neuropathological data and clinical data reporting network with case accrual from each center project. Collected neuropathological data and clinical data available by sharing with center site investigators approved by Administrative Core and by submitting into FITBIR. Central TBI data repository by collecting digital neuropathological data and clinical data from TBI cases and normal controls at each center and posting library of their holdings.

• Resource
• RRID-Legacy
• 4 years ago - submitted by Anita Bandrowski

Software pipeline to analyse genome data from forward genetic screen. Identification of causal variants for specific phenotype.

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• SciCrunch
• 4 years ago - submitted by Mario de Bono

Software analysis toolkit for tracking blobs and extracting intensity values from imaging data, designed for use with ratiometric fluorescent sensors.

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• SciCrunch
• 4 years ago - submitted by Mario de Bono

Software tool as multiworm tracker. Can be used as analysis toolkit for extracting morphological and behavioural data from videos of objects moving in 2D environment.

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• SciCrunch
• 4 years ago - submitted by Mario de Bono

Core facility that provides statistical expertise for benefit of advancing quality of scientific research and education at CSU and beyond, while educating next generation of applied statisticians.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core facility that provides social science research expertise and resources for design, collection, management, analysis, and dissemination of original social science data, including interviews, focus groups, surveys, photo voice, social network analysis, program evaluation, team assessments, and mixed method studies.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Offers consultation on drone systems, UAS project guidance, UAS piloting, assistance with UAS pilot training, liaison and navigation of FAA regulations, and as point of contact for UAS inquiries from outside the University. Assists in authorizing flight requests at CSU and managing Christman Airfield use for drone flights. Maintains fleet of sUAS aircraft and air borne sensors.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core facility that enables research and development programs by providing expertise and access to equipment for synthesis, processing and testing of materials. Support and enables materials research and education by offering range of materials synthesis, processing, and testing equipment, combined with individualized training and staff expertise.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core facility that provides technical guidance, project support, and diverse training opportunities in geospatial sciences. With expertise in geographic information systems, spatial analysis, web mapping, and cartography, Centroid supports researchers in spatial data development, analysis, visualization, and publication ready maps.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Provides access to flow cytometry and cell sorting instrumentation, services, and expertise for all researchers at Colorado State University. FCF includes spectral flow cytometers Cytek Aurora which enables users to perform more than 25 markers in a sample. FCF also has 10X Genomics chromium controller used to barcode single cells to perform single cell sequencing. Offers data analysis of these complex flow cytmetry and single cell sequencing samples using R programming or bash shell based pipelines.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Provides equipment, expert technical assistance and image analysis expertise to enable all aspects of macromolecular structure determination by single particle cryo-electron microscopy.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core performs all aspects of structure determination of large biomolecules such as proteins and nucleic acids including macromolecular crystallization, crystal screening, molecular structure and model building.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core enables study of biomolecular structure, dynamics and interactions in solution at atomic level. Provides NMR spectrometers from 600 MHz to 900 MHz equipped for biomolecular NMR studies. Equipment include 900 MHz Bruker Avance Neo with Oxford 21 T magnet - TCI Cryoprobe 600 MHz Bruker Avance Neo with Bruker Sample Jet (2024) - TCI Cryoprobe 600 MHz Varian Inova with HCN cryoprobe.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core specializes in targeted irradiation of small animals for use in preclinical trials of radiation therapy. Through use of XRAD-SmART Irradiator, core can use x-ray fluoroscopy and on board CBCT to accurately irradiate small lesion areas while protecting normal tissue. Provides experiment design, data analysis, and dosimetry calculations, as well as longitudinal acquisition of CBCT for temporal assessment of tumor growth kinetics.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth