SciCrunch

Stanford University School of Medicine O’Brien Urology Research Center

Center for research to understand the network of cells that cause benign prostatic hyperplasia , the most common cause of urinary bother in men.

Resource
dkNET
4 years ago - submitted by Ko-Wei Lin

University of Califorania at Los Angeles California NanoSystems Institute Molecular Screening Shared Resource Core Facility

Services include use of high throughput screening technology, compounds in various libraries, siRNA sets of druggable genome for mouse and human and database of results from screens. For compounds screens, data points are in singlets.For functional genomics screens we use duplicates. We typically utilize 384 well plates but are flexible in this regard. We can accomodate any plate type ranging from 96 to 1536 well plates. Specialty plates can be handled on needed base. We have special rates for consumables with many vendors based on volume we use. These reduced rates are passed on directly to our screeners.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

University of Chicago Pritzker Nanofabrication Core Facility

Facility is ISO Class 5 cleanroom that specializes in advanced lithographic processing of hard and soft materials. Facility is focused on supporting basic science, applied research, research and development, and prototype production using micro and nanofabrication.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

University of Ottawa Genome Editing and Molecular Biology Core Facility

Facility assists researchers in mammalian genome editing and molecular biology, including CRISPR genetic libraries and screens as well as custom viral vector/particle production. Projects are customized to researchers needs, from full service cell line creation to design and cloning.Supported by Canadian Foundation for Innovation.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

Penn State College of Medicine High Performance Computing Core Facility

Provides computational and storage tools needed to efficiently and effectively process data. High performance computing cluster housing compute cores, graphical processing unit cores, and directly attached high speed storage.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

CouGaR-g

Source code for "Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation".

Resource
SciCrunch
4 years ago - submitted by Simone Ciccolella

University of Texas at Austin Cryo Electron Microscopy Core Facility

Offers training, assisted and unassisted use of microscopes and equipment, as well as consultations and collaborations. Support includes single particle cryo-EM, Cryo-ET, Micro-ED,simple characterization of samples in vitrified aqueous mixtures (e.g. nanoparticle size, etc.).

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

Harvard Medical School Dana Farber Harvard Cancer Center Mouse Engineering Core Facility

Core provides services for generation of transgenic and knockout mice.Provides Nikon Diaphot microscope equipped with Nomarski Optics and Narishige micromanipulators for microinjections, Nikon surgical microscopes for egg isolation and transfer, sutter needle puller and de Fonbrune microforge. Facility maintains mice necessary for egg donors, egg recipients, and vasectomized males.Core offers electroporation of targeting vectors into ES cells. Provides investigators with DNA to identify ES cells carrying desired recombination events and ES cell expansion for microinjection into blastocysts.Services also include CRISPR injections, sperm and embryo cryopreservation, and reanimation with fresh or frozen sperm via IVF or thawing and implanting embryos.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

SignatureHeatmap

Software package that enables signature classification of tumor samples by generating heatmaps using transcriptomic data.

Resource
RRID
4 years ago - by Anonymous

corrplot

Open source software package for statistical programming language R to analysis correlation of different data.

Resource
RRID
4 years ago - by Anonymous

University of California at Santa Cruz Stable Isotope Laboratory Core Facility

Provides light stable isotope ratio analysis services to scientists from UCSC and from around the world.

Resource
RRID
4 years ago - by Anonymous

International Brain Laboratory Data

Data portal hosting access to behavioral data sets generated by International Brain Laboratory aiming to understand brain functions underlying decision making. Datasets are acquired in neuroscience laboratories performing experimental work. In each of these laboratories, mice are first trained in IBL decision making task following standardized training pipeline.

Resource
dkNET
4 years ago - submitted by Maryann Martone

City University of New York Advanced Science Research Center Live Imaging and Bioenergetics Core Facility

Provides Zeiss LSM880 upright two photon confocal microscope with Airyscan, FAST model and CLARITY lens; LSM880 inverted live cell imaging confocal microscope with Airyscan and FAST model; Agilent Seahorse XFe24 live cell metabolic analyzer.Supported applications include in vivo imaging of live animals, time lapse live cell imaging with high resolution optical sectioning, deep imaging of fixed CLARITY tissues, calcium imaging, photo switching and photo uncaging, Fluorescence Recovery After Photobleaching, Forster Resonance Energy Transfer, laser ablation, and measuring mitochondrial respiration and glycolysis in live cells in real time.Provides advanced imaging analysis software Imaris for data processing.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

University of Chicago Engineering and Technical Support Group Core Facility

ETSG serves University of Chicago faculty led research projects. ETSG staff is available to help plan, design, build, test, and install mechanical and electro mechanical apparatus.

Resource
SciCrunch
4 years ago - submitted by Edyta Vieth

EmaCalc

Software package in Python for statistical analysis of Ecological Momentary Assessment data.

Resource
RRID
4 years ago - by Anonymous

MRIQC

Software tool as quality assurance workflow for Brain Imaging Data Structure compliant anatomical and functional MRI datasets. Used to extract no-reference image quality metrics from structural and functional magnetic resonance imaging data.

Resource
RRID
4 years ago - submitted by Russ Poldrack

PhysiPKPD

Open source PhysiCell based software package that allows users to include pharmacokinetics and pharmacodynamics in PhysiCell models. Used for module template for drug treatment in PhysiCell.

Resource
SciCrunch
4 years ago - by Anonymous

pyPhotometry

Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal.

Resource
RRID
4 years ago - submitted by Kevin Chavez Lopez

draw.io

Software tool as diagramming application that enables collaboration in real time.

Resource
RRID
4 years ago - by Anonymous

Stanford Graduate School of Business Data, Analytics, and Research Computing Core Facility

DARC facility engages directly with faculty members, preparing large scale datasets, assisting with data analysis, and consulting on research design. Provides expertise on machine learning, text processing, and cloud services. DARC team also supports Yen compute environment, linux cluster designed for data intensive workloads in business research.

Resource
RRID
4 years ago - submitted by Edyta Vieth

Search Again