Curator Dashboard

Leica Microsystems and Fred Hutch established Leica Center of Excellence in Pacific Northwest to provide researchers with advanced microscopy technologies, support generating scientific discoveries and developing new approaches to preventing and treating cancer and related diseases.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software R package as parallel computing toolset for relatedness and principal component analysis of SNP data.

• Resource
• RRID
• 4 years ago - submitted by Anita Bandrowski

Core is dedicated to analysis of RNA and DNA sequence, structure and interactions in biological and biochemical processes.Specializes in Genomics, Metagenomics, Transcriptomics, Epigenomics, Interactomics, Oncogenomics, Structural Genomics and other fields. Equippment includes NovaSeq 6000, NextSeq 500 and MiSeq next generation sequencing systems and instruments for fractionation, quality and quantity assessment. Services include consultation and assistance, preparation of libraries from DNA (WGS, WES, Amp-seq, ATAC-Seq, ChIP-seq etc.) and RNA (different fractions: mRNA-seq, mRNA-seq, total RNA-seq, miRNA-seq, RIP-seq etc.), sequence custom libraries and conduct bioinformatic analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open source Java based software designed for single molecule localisation microscopy. Software can be used as stand alone library or as plugins for ImageJ image processing software.

• Resource
• RRID
• 4 years ago - submitted by Alex Herbert

Core is component of Integrated Genomics Core/High Throughput Sequencing Facility. Supports population, basic, clinical and translational research by providing centralized cost efficient, high quality genotyping and methylation services using Illumina BeadArray and Infinium microarray assay technologies for Single Nucleotide Polymorphism Genotyping, Copy Number Variant, Loss of Heterozygosity, Insertions Deletion (indel), Structural Variant, and DNA Methylation Analysis. Can assist with selecting appropriate arrays to meet your needs.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Shared resource dedicated to unlocking power of electronic health records for clinical and translational research in cancer care. Electronic phenotyping involves querying electronic health record systems and other clinical information systems and databases to identify patients who meet specific set of clinical characteristics. Can be used to support clinical and translational research pursuits, such as hypothesis generation, retrospective data gathering and hypothesis testing, research planning and grant preparation, subject recruitment for prospective clinical trials, and development of prospective research registries. Provides consultative and technical services.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Provides access to chromatography and mass spectrometry techniques including GC and GC-MS, IC and IC-MS, ICP-MS, LC and LC-MS, and other environmentally relevent techniques such as isotope ratio measurements of water, TIC/TOC, and laser diffraction particle size analysis.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software R package for multivariate microbiome analysis. Statistical methods for analysing multivariate abundance data.

• Resource
• RRID
• 4 years ago - by Anonymous

Software R package for microbiome network analysis. Used for inference of microbial ecological networks from amplicon sequencing datasets. Combines data transformations developed for compositional data analysis with graphical model inference framework that assumes underlying ecological association network is sparse.

• Resource
• RRID
• 4 years ago - by Anonymous

Software tool as framework for rigorous self validated data modeling and integrative, reproducible data analysis.

• Resource
• RRID
• 4 years ago - submitted by John-Marc Chandonia

Software tool to support RepeatMasker searches by adding necessary features to stock NCBI blastn program. RepeatMasker compatible version of standard NCBI blastn program.

• Resource
• RRID
• 4 years ago - submitted by Brandon Pickett

Software hdmf-zarr library implements Zarr backend for Hierarchical Data Modeling Framework as well as convenience classes for integration of Zarr with PyNWB to support writing of NWB files to Zarr. Library is intended to be used in conjunction with Hierarchical Data Modeling Framework.

• Resource
• RRID
• 4 years ago - submitted by Oliver Ruebel

Software tool for data analysis from time stack chemotaxis experiments. Based on NIH ImageJ image processing system.

• Resource
• RRID
• 4 years ago - by Anonymous

Database indexes top nursing and allied health literature available including nursing journals and publications from the National League for Nursing and the American Nurses Association.

• Resource
• RRID
• 4 years ago - submitted by Kalyana Pentapati

Database of bibliographic citations of multidisciplinary areas that covers various journals of medical, scientific, and social sciences including humanities.Publisher independent global citation database.

• Resource
• RRID
• 4 years ago - submitted by Kalyana Pentapati

Full text research database for dental practitioners and researchers. Offers top dental and oral sciences journals commonly purchased by dental schools and related institutions.

• Resource
• RRID
• 4 years ago - submitted by Kalyana Pentapati

Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability.

• Resource
• RRID
• 4 years ago - submitted by Jensen Palmer

Provides access to multi parental genetic reference mouse population derived from eight founder inbred strains, encompassing genetic diversity. Strains have been sequenced and have much genomic data. All of CC strains are kept as live mouse strains. Provides breeding stock for internal use unless other permission is acquired, or experimental cohorts.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core performs expression profiling, SNP genotyping and copy number microarray (Thermo Fisher) services.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Multimodal preclinical in vivo imaging facility for small laboratory animals such as mice and rats. Expertise is in brain research, however it is possible to provide imaging services on any part of or on animal.Instruments include magnetic resonance imager (Bruker BioSpec 70/20 USR) and optical bioluminescence/fluorescence imager (Perkin Elmer IVIS Spectrum), fully equipped with anesthesia delivery and physiological monitoring/control system.Imaging unit is complemented by cell culture laboratory and small animal surgery room, allowing to set up and perform entire experimental protocols as needed. Provides longitudinal imaging services owing to animal housing unit within same space, equipped with individually ventilated cages for both rats and mice (Tecniplast Green line and Emmerald line). Home cage monitoring is also possible for mice as an additional service with our Tecniplast DVC cages.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth