Curator Dashboard

Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files.

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• 4 years ago - by Anonymous

Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.

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• SciCrunch
• 4 years ago - by Anonymous

An interactive 1D NMR spectra processing tool dedicated to metabolomics. This open source software provides a complete set of tools for processing and visualization of 1D NMR data, the whole within an interactive interface based on a spectra visualization.

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• 4 years ago - submitted by Daniel Jacob

Open source software provides GUI tool for spectra processing from 1D NMR metabolomics data, based on interactive interface for spectra visualization, that helps spectra processing.

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• 4 years ago - submitted by Daniel Jacob

Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space.

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• 4 years ago - submitted by Samantha White

Software tool for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing or metatranscriptomics experiments.

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• 4 years ago - submitted by Fan Jiang

Software viral contig verification tool. Classifies contigs as viral, non-viral or uncertain, based on gene content. Also for non-viral contigs it can optionally provide plasmid/non-plasmid classification.

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• 4 years ago - submitted by Fan Jiang

Software tool as naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus, with confidence estimates for each assignment.

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• 4 years ago - submitted by Fan Jiang

Software tool for visualising de novo assembly graphs. By displaying connections which are not present in contigs file, opens up new possibilities for analysing de novo assemblies. Used for interactive visualization of de novo genome assemblies.

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• 4 years ago - submitted by Fan Jiang

Software tool as metagenome assembler that exploits high accuracy of recent data. De novo metagenome assembler, based on haplotype resolved de novo assembler for PacBio Hifi reads. Workflow consists of optional read selection, sequencing error correction, read overlapping, string graph construction and graph cleaning.

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• 4 years ago - submitted by Fan Jiang

Software tool for image quality. Used for labeling quality of images and labeling center point of 3D RI images. Used to mange 3D RI cell images taken from holotomography.

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• 4 years ago - submitted by Jong Hyun Kim

Software package to improve the ease of studying and integrating scATAC-seq datasets. Developers may use this package to obtain data for analysis of multiple tissues, diseases, cell types, or developmental stages. It can also be used to obtain data for validation of new algorithms.

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• 4 years ago - by Anonymous

Software package to improve studying tumour microenvironment with single cell sequencing. Developers may use this package to obtain data for validation of new algorithms and researchers interested in tumour microenvironment may use it to study specific cancers more closely. Curated collection of scRNAseq datasets sequenced from tumours.

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• 4 years ago - by Anonymous

Software tool as framework for adaptive optics data analysis. Object oriented framework for organizing data, metadata and code related to adaptive optics experiment.

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• 4 years ago - submitted by Sara Patterson

Systems biology platform for integrating, mining and analyzing microbiome experiments.Data discovery and analysis web based resource that empowers researchers to fully leverage experimental variables to interrogate microbiome datasets. Used to mine complex microbiome and metagenome studies.

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• 4 years ago - by Anonymous

Multi dimensional image viewer for Python. Used for browsing, annotating, and analyzing large multi dimensional images. Can be coupled to machine learning and image analysis tools enabling more user friendly automated analysis.

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• 4 years ago - submitted by Anita Bandrowski

Core provides access to light microscope systems to perform widefield, confocal, 2-photon/multiphoton, second harmonic generation, total internal reflection (TIRF), and high content imaging.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Platform for individuals who want to make their own data available for research. Used by people to join network with others who wish to contribute to vital research in partnership with and alongside leading scientists. Personal tool for saving and displaying medical information.

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• 4 years ago - submitted by Anita Bandrowski

Software R script for identifying x controls within t distance of each case based on weighted PCA data.

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• 4 years ago - by Anonymous

Project to promote and facilitate sharing of clinical trial data. Provides set of policies to set standards to enhance data availability and transparency in support of strong scientific research which aims to advance scientific and medical knowledge with goal of improving public health and healthcare delivery. Project has the final decision making rights regarding these policies and granting or denial of data requests, as per contractual agreements between the YODA Project and its partners.

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• 4 years ago - submitted by Anita Bandrowski