Curator Dashboard

Software Python package for reading and writing of image data in Neuroglancer precomputed format. Used to read and write Neuroglancer datasets programmatically.

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• 4 years ago - submitted by Edyta Vieth

Software cross platform mobile application that supports 2D/3D/4D image visualization, multi-morphometry annotation, proofreading, interactive imaging system controlling, and distributed collaboration.

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• 4 years ago - submitted by Edyta Vieth

EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases.

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• 4 years ago - submitted by Edyta Vieth

Software package to streamline workflow of imaging data management, visualization, reconstruction and collaboration, and data sharing.

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• 4 years ago - submitted by Edyta Vieth

Labels provide resource to isolate and identify mouse brain anatomical structures. Cell type specific transgenic mice and an MRI atlas were used to adjust and further segment the labels. Highly segmented anatomical labels in the adult mouse brain common coordinate framework.

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• 4 years ago - submitted by Edyta Vieth

BRAIN Initiative Cell Census Network data catalog. Provides access to all major data sets of the BICCN with descriptions.

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• 4 years ago - submitted by Edyta Vieth

MoticEasyScan digital slides scanner.

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• 4 years ago - by Anonymous

Software package to provide set of functions designed to make working with strings easy. Consistent wrappers for common string operations.

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• SciCrunch
• 4 years ago - by Anonymous

Software R package for bindings to liblwgeom library.

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• SciCrunch
• 4 years ago - by Anonymous

Simple PC application for present audio/visual stimuli for fmri paradigms.

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• 4 years ago - submitted by Ivan Gumin

Software R package to correct systematic errors in nanopore sequencing reads of gene libraries. Retrieves true consensus sequences of variants identified by barcode, needing only few reads per variant.

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• SciCrunch
• 4 years ago - by Anonymous

Software for Berthold ORION II (LB 965) microplate luminometers.

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• 4 years ago - by Anonymous

Project to help to end opioid addiction. Addiction Long-term Initiative or NIH HEAL Initiative, to speed scientific solutions to stem national opioid public health crisis. Initiative is funding hundreds of projects nationwide. Researchers are taking variety of approaches to tackle opioid epidemic through understanding, managing, and treating pain, and also through improving prevention and treatment for opioid misuse and addiction.

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• 4 years ago - submitted by Anita Bandrowski

Software to identify each cell’s top neighbours in each batch separately instead of entire cell pool with no accounting for batch. Nearest neighbours for each batch are then merged to create final list of neighbours for cell. Aligns batches in a quick and lightweight manner.

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• 4 years ago - submitted by Kenneth Chiou

Software Python tool for approximate nearest neighbors. Provides Python implementation of Nearest Neighbor Descent for k-neighbor-graph construction and approximate nearest neighbor search.

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• 4 years ago - submitted by Kenneth Chiou

Software R package for similarity and distance quantification between probability functions. Information Theory and Distance Quantification with R. Provides framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.

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• 4 years ago - submitted by Kenneth Chiou

Software Python framework designed to work with multimodal omics data. Aims to provide convenience and speed to its users enabling standardised analysis while staying flexible and expandable. Muon stands on shoulders of and integrates with annotated data object specification and scanpy library for single cell analysis in Python.

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• 4 years ago - submitted by Kenneth Chiou

Software Python package implemented Graph Linked Unified Embedding framework for single-cell multi-omics data integration.

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• 4 years ago - submitted by Kenneth Chiou

Software R package to work with sequence motifs in analysis of genomics data. These include methods to annotate genomic regions or sequences with predicted motif hits and to identify motifs that drive observed changes in accessibility or expression. Functions to produce informative visualizations of obtained results are also provided.

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• 4 years ago - submitted by Kenneth Chiou

Command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores.

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• 4 years ago - submitted by Kenneth Chiou