Curator Dashboard

Software to allow construction, analysis, and simulation of complex models in spreadsheet format.

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• SciCrunch
• 4 years ago - by Anonymous

Software Python tool to convert your source level neuroimaging data to BIDS. Application to convert source data to Brain Imaging Data Structure.

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• RRID
• 4 years ago - submitted by Marcel Zwiers

Software tool as statistical framework for identifying distribution shapes in single-cell RNA-sequencing data.

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• RRID
• 4 years ago - submitted by Malindrie Dharmaratne

Software is add-in tool for Microsoft Excel that computes and tracks many different possible scenarios in model using Monte Carlo simulation.Helps make better decisions through risk modeling and analysis.

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• SciCrunch
• 4 years ago - by Anonymous

Monte Carlo simulation software that makes quantitative risk analysis intuitive. Monte Carlo simulation Excel add-in that allows user to include uncertainty in their spreadsheet models.

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• SciCrunch
• 4 years ago - by Anonymous

Web application for use by epidemiologists and researchers involved in estimating disease prevalence or demonstrating freedom from disease through structured surveys, or in other epidemiological applications.

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• SciCrunch
• 4 years ago - by Anonymous

Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings.

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• RRID
• 4 years ago - submitted by Samantha White

Archive for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi method research in social sciences. QDR provides data management consulting services and actively curates all data projects, maintaining value and usefulness of data over time, and ensuring their availability and findability for re-use.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Software tool as scalable, modular image processing pipeline for multiplexed tissue imaging. Transforms multi channel whole slide images into single cell data.

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• RRID
• 4 years ago - submitted by Sarah Arena

Center includes studies for responsiveness and resistance to anti cancer drugs. Committed to training students and postdocs, promoting junior faculty and ensuring that data and software are reproducible, reliable and publicly accessible. Member of National Cancer Institute’s Cancer Systems Biology Consortium.

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• RRID
• 4 years ago - submitted by Sarah Arena

Consortium provides guidelines for highly multiplexed tissue images. Standard that applies best practices developed for genomics and other microscopy data to highly multiplexed tissue images and traditional histology. Data and metadata standards consistent with Findable, Accessible, Interoperable, and Reusable (FAIR) standards that guide data deposition, curation and release.

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• RRID
• 4 years ago - submitted by Sarah Arena

Gathers together imaging and omic datasets into molecular maps of normal and diseased tissue from human and animal models, with emphasis on cancer. Used to access datasets, educational curriculum and talks, and recommended methods and software.

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• SciCrunch
• 4 years ago - by Anonymous

Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data.

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• RRID
• 4 years ago - by Anonymous

Software package for directed single cell fate mapping in diverse scenarios, including regeneration, reprogramming and disease. Automatically detects initial, intermediate and terminal populations, predicts fate potentials and visualizes continuous gene expression trends along individual lineages. Applied to lineage traced cellular reprogramming data, predicted fate probabilities correctly recover reprogramming outcomes.

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• RRID
• 4 years ago - by Anonymous

Software tool to discover order of gene expression and functional events during cell state transitions at single cell resolution. Works on any single cell trajectory or pseudo time ordering of cells to discover genes that act as on/off switches between cell states and ordering at which these switches take place. Takes any single-cell pseudo-time trajectory and determines precise order of gene expression and functional event changes over time.

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• RRID
• 4 years ago - by Anonymous

Web portal that explains technique of Diffeomorphic Mapping and Shape Analysis.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Center for collaboration of biologists, chemists, and engineers to develop fluorescence technologies for biomedical applications used in drug discovery, neuroscience, biomedical imaging and cancer biology programs. Technologies launched from MBIC include the Cyanine Dyes (Cy3, Cy5, Cy7), High Content Screening (Cellomics, Inc), Difference In-Gel Electrophoresis (DIGE), Qdots for In-vivo imaging, Fluorogen Activating Proteins, and DNA Nanotags.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Joint computational research center with Carnegie Mellon University and University of Pittsburgh. Provides university, government and industrial researchers with access to several systems for high performance computing, communications and data storage available to scientists and engineers nationwide for unclassified research.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Repository for co-ordinating work on ontologies for Brain Data Standards Project. Automate data driven cell type ontology development for Brain Data Standards initiative.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Platform to search neurons of interest by neuron anatomy, morphology, and connectivity patterns. Used to Explore morphology and connectivity features of neurons of interest, Upload neuron (swc file or eswc file) and calculate morphology features, Search similar neurons, Explore 3D visualization of neurons, Explore cross species atlas. Open source pan-neuron table of morphology and connectivity.

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• RRID
• 4 years ago - submitted by Edyta Vieth