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PreprintMatch
Software tool to match bioRxiv preprints with their corresponding PubMed paper.
- Resource
- RRID
- 4 years ago - submitted by Peter Eckmann
fastText
Software library for efficient text classification and representation learning.
- Resource
- RRID
- 4 years ago - submitted by Peter Eckmann
AutomaticSleepScoringTool
Software pipeline for sleep researchers to perform automatic sleep scoring for rodents. Artificial neural network for automated behavioral state classification in rats.
- Resource
- RRID
- 4 years ago - submitted by Mark Laubach
iReceptor
Data discovery platform that facilitates curation, analysis and sharing of antibody/B-cell and T-cell receptor repertoires from multiple labs and institutions. Used to increase value of data through sharing with community. Platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories.
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- dkNET
- 4 years ago - submitted by Ko-Wei Lin
Lens
Portal to search, analyze and manage patent and scholarly data. Serves global patent and scholarly knowledge as public good to inform science and technology enabled problem solving.
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- dkNET
- 4 years ago - submitted by Ko-Wei Lin
BIDS-Matlab
Software MATLAB/Octave tools to interact with datasets conforming to Brain Imaging Data Structure format.
- Resource
- RRID
- 4 years ago - by Anonymous
Akern Bodygram Dashboard
Software valifìdated for evaluation of body composition using Body Impedance Assessment.
- Resource
- RRID
- 4 years ago - by Anonymous
Montpellier Imagining Resources MRI Core Facility
Cell imaging facility of Montpellier area, France.Offers access to cutting edge instruments for optical and electron microscopy, flow cytometry, and X-ray micro tomography. Instruments are housed in seven sites that mirror distribution of Life Science research campuses of the region. Mission is to support research by offering imaging instruments and image analysis solutions.
- Resource
- SciCrunch
- 4 years ago - submitted by Edyta Vieth
Harvard Medical School Research Computing Core Facility
Promotes deeper collaboration across Harvard biomedical research ecosystem.This includes improved capabilities and performance by establishing more transparent and sustainable IT services for our research community.
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- SciCrunch
- 4 years ago - submitted by Edyta Vieth
University of Colorado Boulder Polymeric and Optical Materials Characterization Shared Core Facility
Facility specializes in material characterization of polymers, hydrogels, liquid crystals, and composites.
- Resource
- SciCrunch
- 4 years ago - submitted by Edyta Vieth
Texas A and M University Laboratory for Synthetic Biologic Interactions Core Facility
Facility housed in Department of Chemistry.Designed to be multi user laboratory supporting major research initiatives. Instruments are currently available on fee for use basis, and others may be made available on case by case considerations.
- Resource
- SciCrunch
- 4 years ago - submitted by Edyta Vieth
arcasHLA
Software tool for high resolution HLA typing from RNAseq. Fast and accurate in silico inference of HLA genotypes from RNA-seq.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
HLA-HD
Software HLA typing algorithm for next generation sequencing data.Can accurately determine HLA alleles with 6 digit precision from NGS data (fastq format). RNA-Seq data can also be applied.
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- dkNET
- 4 years ago - submitted by Ko-Wei Lin
HLA-VBSeq
Software for accurate HLA typing at full resolution from whole genome sequencing data. Used to estimate the most likely HLA types from high throughput sequencing data.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
HLA-LA
Software implements new graph alignment model for human leukocyte antigen, based on projection of linear alignments onto variation graph. Enables accurate HLA type inference from whole genome and whole exome Illumina data; from long-read Oxford Nanopore and Pacific Biosciences data and from genome assemblies.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
HLAminer
Software for HLA predictions from next generation shotgun sequence read data and supports direct read alignment and targeted de novo assembly of sequence reads. Used for identifying HLA alleles directly from shotgun sequence datasets.Supports predictions from variety of DNA sequencing technologies including those from Illumina, MGI, PacBio and Oxford Nanopore.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
HLAscan
Software tool for genotyping of HLA region using next generation sequencing data. Performs alignment of reads to HLA sequences from international ImMunoGeneTics project/human leukocyte antigen (IMGT/HLA) database.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
Kourami
Software graph guided assembly for novel human leukocyte antigen allele discovery. Graph guided assembly for HLA haplotypes covering typing exons using high coverage whole genome sequencing data.Implemented in Java and supported on Linux and Mac OS X.
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- dkNET
- 4 years ago - by Anonymous
OptiType
Software tool for precision HLA typing from next generation sequencing data.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
Polysolver
Software tool for HLA typing based on whole exome sequencing data and infers alleles for three major MHC class I genes. Enables accurate inference of germline alleles of class I HLA-A, B and C genes and subsequent detection of mutations in these genes using inferred alleles as reference.
- Resource
- dkNET
- 4 years ago - submitted by Ko-Wei Lin
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