Curator Dashboard

Core laboratory for nucleic acid sequencing and bioinformatics. Mission includes research support, education, and training.Services encompass range of genomic techniques and applications, sequencing technologies, and bioinformatics analyses. GGBC operates multiple platforms for short-, long-, and single-molecule sequencing reads (i.e., Illumina MiSeq and NextSeq, PacBio Sequel, and Oxford Nanopore MinIon). We also write letters of support (LOS) to offer our capabilities and expertise for grant applications submitted to funding agencies.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Protein identification and proteome analysis using Orbitrao Eclipse,Fusion and Q Exactive LC-MS/MS platforms. Affinity selection for phosphopeptides with analysis using HCD, CID and ETD. Validation and quantitation of proteins using MRM with a TSQ Vantage triple quad.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Research on microbial agents, which cause lethal diseases in humans and for which effective drugs or preventive vaccines are not available, must be conducted by well-trained investigators in specially built, well-maintained laboratories. Core provides the triad of service, research and development, and education and training.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software to visualize and qualitatively analyze mass spectrometry data. Used to display chromatograms and spectra, detect and integrate chromatographic peaks, search mass spectral libraries, simulate mass spectra, subtract background spectra, apply scan filters, annotate plots with text and graphics, create and save layouts, view the status of various instrument parameters during data acquisition, and create a 2D or 3D representation of an analysis displaying the acquired mass/wavelength scans. Part of liquid chromatography mass spectrometry system.

• Resource
• RRID
• 4 years ago - by Anonymous

Community of researchers studying benign urology diseases at U54 O’Brien Cooperative Research Centers, P20 Exploratory Centers, and K12 Career Development Programs funded by the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), one of the institutes within the National Institutes of Health (NIH). CAIRIBU Centers and Programs are united around the overall objectives of improving our understanding of the mechanisms of urogenital diseases and developing clinical therapies for treating them by building collaborative and interactive research platforms that span the gamut from basic to translational to population research.

• Resource
• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Organization focused on disorder of men with benign prostate disease, and promote health and well-being of men by advancing the best care to every patient through integrated clinical practice, education and research. Provides collaborative platform to elevate knowledge base of members about pathophysiology, diagnosis, management, and treatment of prostate disease.

• Resource
• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Organization to optimize the care of women, men, and children with lower urinary tract dysfunction and/or pelvic floor disorders through education, research and involvement in health care policy. To improve the art and science of Urology through basic and applied clinical research in urodynamics and neurourology, voiding function and dysfunction, female urology and pelvic floor dysfunction, and to disseminate and teach these concepts.

• Resource
• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Research and education program in Harvard Program in Therapeutic Science at Harvard Medical School to advance science and to develop technology needed to accelerate invention of new medicines and personalization of patient care. Used to study molecular causes of disease, ways drugs exert their therapeutic and adverse effects, design and interpretation of clinical trials.

• Resource
• RRID
• 4 years ago - submitted by Sarah Arena

Non-profit organization founded in 1983 by group of international urologists. Society sponsors annual meetings held at different sites of the world. Endourological Society has sub-societies through out the world including the British Society of Endourology, the Mexican Endourological Society, and the Korean Endourology and ESWL Society.

• Resource
• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Parallel multitool approach for phage prediction combined with annotation and classification downstream strategy. Used for identification and analysis of phage sequences. Phage identification via nextflow and docker or singularity.

• Resource
• RRID
• 4 years ago - by Anonymous

Software R package contains Molecular Signatures Database (MSigDB) gene sets for multiple organisms in tidy data format. Gene sets in standard R data frame with key value pairs. Package includes human genes as well as corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

• Resource
• RRID
• 4 years ago - submitted by Igor Dolgalev

Principles and Practice of Drug Development (PPDD) is a joint MIT-Harvard course welcoming students from outside of Harvard or MIT. It is the longest-running course in drug discovery and development in the Boston Area.

• Resource
• RRID
• 4 years ago - submitted by Sarah Arena

Reference atlas for mice. Contains both average and annotation templates.

• Resource
• RRID
• 4 years ago - submitted by Yuanyuan Li

Connects industry members with Penn State research community of artificial intelligence and machine learning researchers and their students to solve real world problems and seize market opportunities.

• Organization
• SciCrunch
• 4 years ago - submitted by Gretta Kellogg

DIA-NN, that exploits deep neural networks and new quantification and signal correction strategies for the processing of data-independent acquisition (DIA) proteomics experiments. DIA-NN improves the identification and quantification performance in conventional DIA proteomic applications, and is particularly beneficial for high-throughput applications, as it is fast and enables deep and confident proteome coverage when used in combination with fast chromatographic methods.

• Resource
• RRID-Legacy
• 4 years ago - submitted by giorgio oliviero

Software tool for processing of data independent acquisition proteomics experiments. Universal automated software suite for DIA proteomics data analysis. Neural networks and interference correction enable deep proteome coverage in high throughput.

• Resource
• RRID-Legacy
• 4 years ago - submitted by giorgio oliviero

Java Graphical User Interface for suite of computational tools enabling comprehensive analysis of mass spectrometry based proteomics data.

• Resource
• RRID-Legacy
• 4 years ago - submitted by giorgio oliviero

Laboratory is located in Room 429 of the Levy Building.Services include tissue processing; H&E staining, trichrome, and other staining; creation of frozen sections; and deparaffinization. Provides cryostat for use by investigators within Penn Dental Medicine; cryostat training is available for a fee. Investigators requiring the services of the Tissue Processing Laboratory should contact the facility to arrange a meeting to set up the appropriate protocols. Special handling, specimen orientation, and any unique aspects of the tissue being processed will be discussed at that time; in some instances, it may be advantageous for the investigator to be present initially when the specimens are being oriented in the hot paraffin prior to the actual sectioning.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Fluorescence microscopy facility with two Leica confocal microscopes, one with superresolution capability,second with multi-photon imaging capability, and Zeiss Lightsheet microscope. Facility offers consultation, training, and support.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Facility, located at the University of Delaware Main campus (UD) in Newark, Delaware, provides flow cytometry and hematology services. Facility is equipped with 15-color FACSAria Fusion high-speed cell sorters,BD Rhapsody Express Cell Processing Unit,VetScan HM5c veterinary hematology analyzer, Nexcelom Cellometer Vision cell counter, Zeiss Axiovert 200 inverted fluorescent microscope,Thermo Shandon Cytospin 4 & a Beckman Spinchron DLX centrifuge,General Laboratory facilities for Mammalian Cell Culture and Sample preparation,Laminar flow BSL-2 biosafety cabinets, microscopes and centrifuges.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth