Curator Dashboard

Database for hosting and sharing neuroimaging and neuroanatomical datasets for human and primate species. Includes 1) curated, user created Study datasets, extensively analyzed neuroimaging data associated with published figures/manuscripts, 2) Reference datasets mapped to brain atlas surfaces and volumes in human and nonhuman primates for use as general resources (e.g., published cortical parcellations), and 3) ConnectomeDB powered by BALSA for distributing HCP-Young Adult and related HCP-style processed imaging and phenotypic datasets. Datasets in BALSA may include PMID and/or DOI that links them directly to relevant publications.

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• 4 years ago - submitted by Anita Bandrowski

Frontier (Ver 4.1) is used to estimate stochastic frontier models. Frontier Version 4.1 Resource URL https://scicrunch.org/resources/about/registry/SCR_022959 Description FRONTIER is used to obtain maximum likelihood estimates of the parameters of a variety of stochastic production and cost frontiers, and estimates of mean and individual technical or cost efficiencies. Defining Citation SCR_022958 Community resources Status pending Submitter Email czunigagonzales@gmail.com

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• 4 years ago - submitted by Carlos Alberto Zuniga Gonzalez

Software tool to estimate stochastic frontier models. Used to obtain maximum likelihood estimates of parameters of variety of stochastic production and cost frontiers, and estimates of mean and individual technical or cost efficiencies.

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• 4 years ago - submitted by Carlos Alberto Zuniga Gonzalez

Center for research to understand the network of cells that cause benign prostatic hyperplasia , the most common cause of urinary bother in men.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Services include use of high throughput screening technology, compounds in various libraries, siRNA sets of druggable genome for mouse and human and database of results from screens. For compounds screens, data points are in singlets.For functional genomics screens we use duplicates. We typically utilize 384 well plates but are flexible in this regard. We can accomodate any plate type ranging from 96 to 1536 well plates. Specialty plates can be handled on needed base. We have special rates for consumables with many vendors based on volume we use. These reduced rates are passed on directly to our screeners.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Facility is ISO Class 5 cleanroom that specializes in advanced lithographic processing of hard and soft materials. Facility is focused on supporting basic science, applied research, research and development, and prototype production using micro and nanofabrication.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Facility assists researchers in mammalian genome editing and molecular biology, including CRISPR genetic libraries and screens as well as custom viral vector/particle production. Projects are customized to researchers needs, from full service cell line creation to design and cloning.Supported by Canadian Foundation for Innovation.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Provides computational and storage tools needed to efficiently and effectively process data. High performance computing cluster housing compute cores, graphical processing unit cores, and directly attached high speed storage.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Source code for "Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation".

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• SciCrunch
• 4 years ago - submitted by Simone Ciccolella

Offers training, assisted and unassisted use of microscopes and equipment, as well as consultations and collaborations. Support includes single particle cryo-EM, Cryo-ET, Micro-ED,simple characterization of samples in vitrified aqueous mixtures (e.g. nanoparticle size, etc.).

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Core provides services for generation of transgenic and knockout mice.Provides Nikon Diaphot microscope equipped with Nomarski Optics and Narishige micromanipulators for microinjections, Nikon surgical microscopes for egg isolation and transfer, sutter needle puller and de Fonbrune microforge. Facility maintains mice necessary for egg donors, egg recipients, and vasectomized males.Core offers electroporation of targeting vectors into ES cells. Provides investigators with DNA to identify ES cells carrying desired recombination events and ES cell expansion for microinjection into blastocysts.Services also include CRISPR injections, sperm and embryo cryopreservation, and reanimation with fresh or frozen sperm via IVF or thawing and implanting embryos.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software package that enables signature classification of tumor samples by generating heatmaps using transcriptomic data.

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• 4 years ago - by Anonymous

Open source software package for statistical programming language R to analysis correlation of different data.

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• 4 years ago - by Anonymous

Provides light stable isotope ratio analysis services to scientists from UCSC and from around the world.

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• 4 years ago - by Anonymous

Data portal hosting access to behavioral data sets generated by International Brain Laboratory aiming to understand brain functions underlying decision making. Datasets are acquired in neuroscience laboratories performing experimental work. In each of these laboratories, mice are first trained in IBL decision making task following standardized training pipeline.

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• dkNET
• 4 years ago - submitted by Maryann Martone

Provides Zeiss LSM880 upright two photon confocal microscope with Airyscan, FAST model and CLARITY lens; LSM880 inverted live cell imaging confocal microscope with Airyscan and FAST model; Agilent Seahorse XFe24 live cell metabolic analyzer.Supported applications include in vivo imaging of live animals, time lapse live cell imaging with high resolution optical sectioning, deep imaging of fixed CLARITY tissues, calcium imaging, photo switching and photo uncaging, Fluorescence Recovery After Photobleaching, Forster Resonance Energy Transfer, laser ablation, and measuring mitochondrial respiration and glycolysis in live cells in real time.Provides advanced imaging analysis software Imaris for data processing.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

ETSG serves University of Chicago faculty led research projects. ETSG staff is available to help plan, design, build, test, and install mechanical and electro mechanical apparatus.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software package in Python for statistical analysis of Ecological Momentary Assessment data.

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• 4 years ago - by Anonymous

Software tool as quality assurance workflow for Brain Imaging Data Structure compliant anatomical and functional MRI datasets. Used to extract no-reference image quality metrics from structural and functional magnetic resonance imaging data.

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• 4 years ago - submitted by Russ Poldrack

Open source PhysiCell based software package that allows users to include pharmacokinetics and pharmacodynamics in PhysiCell models. Used for module template for drug treatment in PhysiCell.

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• SciCrunch
• 4 years ago - by Anonymous