Curator Dashboard

Web service that converts all 30 reconstruction formats (and 65 variations) described in scientific literature into SWC standard. Service is available open-source through user-friendly browser interface and Application Programming Interface.

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• RRID
• 4 years ago - by Anonymous

Software tool as set of scripts to prepare the input for several sequence-based RNA splicing methods from VCF files.

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• RRID
• 4 years ago - submitted by Pedro Barbosa

Repository of code, data, and documentation to reproduce computational evaluation performed to identify the best tools/models to predict genetic variation in deep intronic regions of human genome.

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• RRID
• 4 years ago - submitted by Pedro Barbosa

Software tool that analyses performance of several variant prediction methods at different levels. Used to benchmark variant effect predictors from VCF files.

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• RRID
• 4 years ago - submitted by Pedro Barbosa

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• NIF
• 4 years ago - by Anonymous

Software object oriented, lightweight and standalone Python toolbox for neural data analysis. Its core features five versatile timeseries objects from Pandas library, allowing it the versatility to be used with most raw neuroscience data types and produce some common analysis forms.

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• RRID
• 4 years ago - submitted by Jensen Palmer

Provides expertise and access to measurements of behavioral function and movement analysis for human movement variability research. Core services include access to human behavioral function measurements (3-D kinematics, kinetics, electromyography, and imaging), neuromuscular control of movements using virtual reality environments, EEG and fNIRS capabilities, dual-task measurements, blood flow and ultrasound technologies, portable pulmonary and energy expenditure assessments, movement modelling and simulation, and muscle strength measurements.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open-source tool for event organisation, archival and collaboration. Event management system made at CERN.

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• RRID
• 4 years ago - by Anonymous

Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions.

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• RRID
• 4 years ago - by Anonymous

Software package for use in complex networks and graph theory research. Mathematica interface for igraph. Provides Mathematica interface to popular igraph network analysis package, as well as many other functions for working with graphs in Mathematica. IGraph/M comes pre-packaged and ready to use on Windows, OS X and Linux (64-bit Intel), as well as the Raspberry Pi computer. The code is open source and can be compiled on other platforms as well (such as 32-bit Windows).

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• RRID
• 4 years ago - by Anonymous

Provieds acess to light microscopy techniques and instruments, consultation, training, and assists with project collaborations.Provides support with selecting imaging techniques, microscope systems, and setting up imaging experiments.Offers expertise in imaging techniques, such as Spinning disk confocal microscopy,Laser scanning confocal microscopy, 2-photon microscopy, Light sheet microscopy,Wide-field microscopy,Total internal reflection fluorescence (TIRF) microscopy ,Laser capture microdissection,Extended resolution microscopy,Quantitative phase imaging,Live cell and organoid imaging,Photomanipulation

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Facility located at the Faculty of Medicine providing cutting edge instrumentation and expertise to researchers in Ottawa and around the world.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects.

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• RRID
• 4 years ago - by Anonymous

Multi-modal time series imputation model that can use additional modality (another cross-sectional or time-series data) to impute missing values in time series data. This multi-modal approach shows improved performance over uni-modal imputation models.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Software package to impute gene expression for all participants, whether they have partially or completely missing gene expression.

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• dkNET
• 4 years ago - submitted by Ko-Wei Lin

Software tool can learn complex interconnections of epigenetic features and infer unmeasured data from any available input. Can learn cell type-specific properties, build biologically meaningful vector representations of cell types, and utilize these representations to generate cell type-specific predictions of effects of non-coding variations in human genome.

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• RRID
• 4 years ago - by Anonymous

Enzyme immunoassay (ELISA) for the determination of Corticosterone in rat and mouse serum or plasma. For research use only, not for use in diagnostic procedures.

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• SciCrunch
• 4 years ago - submitted by Pique Choi

Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments.

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• RRID
• 4 years ago - by Anonymous

Software R package to implement model selection and multimodel inference based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc) from various model object classes. Package implements classic model averaging for given parameter of interest or predicted values, as well as shrinkage version of model averaging parameter estimates or effect sizes. Package includes diagnostics and goodness-of-fit statistics for certain model types including those of 'unmarkedFit' classes estimating demographic parameters after accounting for imperfect detection probabilities.

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• RRID
• 4 years ago - by Anonymous

A software tool to browse cell genomics. The UCSC Cell Browser is an interactive viewer for single-cell expression. You can find a few datasets converted at UCSC in the list on the left. You can also set one up yourself, by installing the package. Exporters to create a Cell Browser from your own data are integrated into Seurat or Scanpy and we provide one for CellRanger and for text files. We are very happy about bug reports or feedback: cells@ucsc.edu. Or open an issue in our GitHub Repo If you use the UCSC Cell Browser in your research, please cite our Bioinformatics paper. If you are also using data from a specific dataset we host, please also cite the original authors of that dataset (visible under 'Info & Download').

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• RRID
• 4 years ago - submitted by Anita Bandrowski