Curator Dashboard

Project to develop and utilize imaging infrastructure to create human brain cell census and instantiate it in coordinate system that will enable immediate impact of all in vivo MRI studies of human brain. Consortium for creating cellular census of human cerebral cortex.

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• RRID
• 4 years ago - submitted by Leah Morgan

Software tool as purity ploidy estimator for whole genome sequenced data. Used for copy number calling and determination of sample purity.

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• RRID
• 4 years ago - by Anonymous

Software tool for detecting structural variants in sequencing data using genome wide local assembly. Genome wide detection of structural variants and indels by local assembly. Used for detecting SVs from short read sequencing data using genome wide local assembly with low memory and computing requirements.

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• RRID
• 4 years ago - by Anonymous

Software tool for rapid detection of structural variants and indels for germline and cancer sequencing applications. Used to call structural variants and indels from mapped paired end sequencing reads.

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• RRID
• 4 years ago - by Anonymous

Repository of many types and sources of data including, but not limited to, assessments, imaging, wearable, and biological samples, collected from research projects at the Centre for Addiction and Mental Health. Data that individuals choose to share to advance mental health.

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• RRID
• 4 years ago - by Anonymous

Software tool set for simulating and evaluating SVs, merging and comparing SVs within and among samples, and includes various methods to reformat or summarize SVs. Used for for SV simulation, comparison and filtering.

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• RRID
• 4 years ago - by Anonymous

Software package for validating sample identity in next generation sequencing studies within and across data types. Used for identifying next generation sequencing data files from the same individual. Used for checking sample matching for NGS data.

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• RRID
• 4 years ago - by Anonymous

Software pipeline for quantification of Tumor Immune contexture from human RNA-seq data.

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• RRID
• 4 years ago - by Anonymous

Software framework for unsupervised integration of multi-omics data sets. Used for discovering principal sources of variation in multi omics data sets.

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• RRID
• 4 years ago - by Anonymous

Software R toolbox for Archetypal Analysis and Pareto Task Inference for unsupervised characterisation of single cell data. Allows describing continuum of cell states by identifying representative cells with most distinctive expression. Detecting which genes and functional annotations make those cells distinctive gives marker genes and predicted functions for each state.

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• RRID
• 4 years ago - by Anonymous

Supplier for research frogs for biomedical research community worldwide. Supplies: Xenopus laevis and tropicalis frogs, frog ovary, oocytes, eggs, testes.

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• RRID
• 4 years ago - submitted by Rob Weymouth

Software DNA and RNA sequence analysis pipeline.

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• RRID
• 4 years ago - by Anonymous

Software tool for copy number analysis.

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• RRID
• 4 years ago - by Anonymous

Software tool as variant caller for SNVs and small indels. Implemented as software application written in C++ .

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• RRID
• 4 years ago - by Anonymous

Center coordinates ideas and investments to advance and democratize access to Stanford cores, instrumentation, scientific and technical staff, allowing users to perform innovative, rigorous experiments.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Computerized, non invasive system for measuring mouse and rat blood pressure. Blood pressure analyzer is standard in transgenic and knockout mouse research.

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• RRID
• 4 years ago - by Anonymous

Software is part of MouseOx Plus pulse oximeter system.

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• RRID
• 4 years ago - by Anonymous

Component of Accelerating Medicines Partnership Common Metabolic Diseases being developed at University of California San Diego as part of larger consortium of academic, industry and non-profit institutions worldwide. Resource is based on software developed by ENCODE DCC at Stanford University. Atlas provides epigenomics and other functional genomics data to promote understanding of genetic basis of common metabolic diseases.

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• dkNET
• 4 years ago - submitted by Maryann Martone

Software R package for quality check of HTG EdgeSeq datasets.

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• SciCrunch
• 4 years ago - by Anonymous

Tecnai T12 microscope combines all imaging, diffraction, and analytical techniques at good spatial resolution and detection efficiency. Transmission electron microscope with operating voltage range of 20 to 120 kV. FEI Tecnai T12 120kV TEM and 2k TVIPS camera.

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• SciCrunch
• 4 years ago - by Anonymous