Curator Dashboard

Web tool as Brassica napus genome browser.

• Resource
• dkNET
• 4 years ago - by Anonymous

Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes.

• Resource
• dkNET
• 4 years ago - by Anonymous

Software integrative toolkit developed for interactive analyses of big biological data.

• Resource
• RRID
• 4 years ago - by Anonymous

Software for molecular evolutionary genetics analysis.Enables comparative analysis of molecular sequences in phylogenetics and evolutionary medicine.

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• RRID
• 4 years ago - by Anonymous

Applications: WB, IP, IHC-P, IF-IC, F, ChIP

• Resource
• RRID
• 4 years ago - submitted by Dongmei Gou

Web protein hydrophilicity analysis tool.

• Resource
• dkNET
• 4 years ago - by Anonymous

Web application for predicting subcellular localization of plant proteins including those with multiple sites.Top Down Strategy to Augment Power for Predicting Plant Protein Subcellular Localization.

• Resource
• dkNET
• 4 years ago - by Anonymous

Web application for integrating phylogeny and Gene Ontology terms into subcellular protein colalization prediction.Extensive high performance subcellular protein localization prediction system.

• Resource
• dkNET
• 4 years ago - by Anonymous

Web tool for secondary structural analysis. Used for secondary structure prediction.

• Resource
• RRID
• 4 years ago - by Anonymous

Web gene structure display server. GSDS 2.0 is upgraded gene feature visualization server with newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing generated figure.User specified phylogenetic tree can be added to facilitate further evolutionary analysis.

• Resource
• RRID
• 4 years ago - by Anonymous

Software package as eukaryotic non model annotation pipeline.Used for bringing functional annotation to non-model eukaryotic transcriptomes to improve the accuracy, speed, and flexibility of functional gene annotation for de novo assembled transcriptomes in non-model eukaryotes. Addresses fragmentation and related assembly issues that result in inflated transcript estimates and poor annotation rates of protein-coding transcripts.

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• RRID
• 4 years ago - by Anonymous

Software pipeline to analyze read depth along long read contigs and to find outliers.

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• RRID
• 4 years ago - by Anonymous

SyRI compares alignments between two chromosome level assemblies and identifies synteny and structural rearrangements.

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• RRID
• 4 years ago - by Anonymous

Software package for post acquisition data processing that allows users to visualize, review, and export Imaging Mass Cytometry data acquired with Hyperion Imaging System and CyTOF.

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• RRID
• 4 years ago - by Anonymous

Sotware R package for differential discovery analyses in high dimensional cytometry data including flow cytometry, mass cytometry or CyTOF, and oligonucleotide tagged cytometry.

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• RRID
• 4 years ago - by Anonymous

Benchtop spectrophotometer designed for DNA, RNA, and protein quantification, one sample at time using only 1–2 uL of sample without dilution, even for highly concentrated samples.

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• RRID
• 4 years ago - by Anonymous

Bentchtop Thermal Cycler for everyday PCR. Features innovative, safe heated lid and large LCD color touch screen.

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• RRID
• 4 years ago - by Anonymous

qPCR instrument with basic features ideal for those new to qPCR or those who have limited budget. System offers quality, reliability, and advanced user experience of QuantStudio family of instruments.

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• RRID
• 4 years ago - by Anonymous

Software tool to construct Data Envelopment Analysis frontiers for calculation of technical and cost efficiencies and also for calculation of Malmquist TFP Indices.

• Resource
• RRID
• 4 years ago - submitted by Carlos Alberto Zuniga Gonzalez

Software to detect regions of interests and distinguishes cells and sub-cellular objects within these target regions from immunohistochemistry specimen. Used for digital pathology image analysis.

• Resource
• RRID
• 4 years ago - by Anonymous