Curator Dashboard

Assists graduate students, staff and faculty launch, economize and expedite their research, especially when it involves DNA extraction and quality checks, targeted genotyping and DNA content analysis. Facilitates usage of complementary cores and assists with research planning and data analysis.AGL members have free lab access and reduced costs for services as well as one-on-one training and advising with AGL staff.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Facility offers genomics profiling services including RNAseq, small RNA sequencing, and ATACseq.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open source software tool for automatic axon and myelin segmentation from microscopy data using convolutional neural networks.

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• RRID
• 4 years ago - by Anonymous

Web tool for text mining and semantic technologies for biomedical content discovery. Knowledge base of biomedical text mining results. Used to discover cause-effect relations between multiple entity types and deliver standardized representation of knowledge.

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• RRID
• 4 years ago - by Anonymous

Facilitates scientific research of nervous system function to enhance development and testing of novel therapeutic strategies for treatment of nervous system disorders. Provides resource capacity typically unavailable or impractical in individual laboratory. Major areas of specialization include surgical approaches to model production and assessment, behavior testing of sensorimotor functions, in vivo electrophysiological recording (EEG, EMG, ERP). Procedures are intended for mice and rats. Procedures can be developed based on client interests.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software tool for nutrition analysis, diet and exercise tracking, and menu planning. Combines researched food and ingredient database with interface for accurate and comprehensive nutrition analysis.

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• RRID
• 4 years ago - by Anonymous

Provider of measurement and analysis of Patient Reported Outcomes and their linkage to clinical data. By embedding resulting insights into individual treatments and care management, enables Value based Healthcare initiatives. Software company works from Berlin, Cologne and London on product development and supports centers, registries and research projects. Patient-Reported Outcomes are collected directly from patients in form of standardized questionnaires and provide insights into treatment effects and health related quality of life. Automatically linked with clinical observations, data based decision making basis is created for medical, therapeutic, and economic issues.

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• RRID
• 4 years ago - by Anonymous

Provides consultation and training in ultra high resolution imaging of cells and tissues in fixed or live states. Provides expertise in quantitative image analysis and consultations on microscopy related research projects.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Analysis code relevant to scRNA sequencing analysis. Code for Fink and Sona et.al. (2022) publication.

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• RRID
• 4 years ago - by Anonymous

Software R package that contains functions for training and plotting classification and regression models. Includes methods for pre-processing training data, calculating variable importance, and model visualizations.

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• RRID
• 4 years ago - submitted by Muhammad Farooq

Software R package that simulates pleiotropy, partial pleiotropy, and spurious pleiotropy in wide range of genetic architectures, including additive, dominance and epistatic models. Used to simulate multiple traits controlled by loci with varying degrees of pleiotropy.

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• RRID
• 4 years ago - submitted by Muhammad Farooq

Software R package implements large collection of Bayesian regression models, including parametric variable selection and shrinkage methods and semiparametric procedures.

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• RRID
• 4 years ago - submitted by Muhammad Farooq

Software R package as fast implementation of Random Forests for high dimentional data.

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• RRID
• 4 years ago - submitted by Muhammad Farooq

Interface to H2O4GPU, collection of GPU solvers for machine learning algorithms.

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• RRID
• 4 years ago - submitted by Muhammad Farooq

Software R package for mixed models with single variance component besides residual error, which allows for efficient prediction with unreplicated training data. Makes ridge regression and other kernel methods accessible to plant breeders interested in genomic selection.

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• RRID
• 4 years ago - submitted by Muhammad Farooq

Web tool as protein docking server, based on rigid body docking programs ZDOCK and M-ZDOCK, to predict structures of protein-protein complexes and symmetric multimers.

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• RRID
• 4 years ago - by Anonymous

Web tool to predict and analyze exonic splicing silencers.

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• RRID
• 4 years ago - by Anonymous

Software framework for modeling sequence motifs based on maximum entropy principle.

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• RRID
• 4 years ago - by Anonymous

Software library to automatically reject bad trials and repair bad sensors in magneto/electroencephalography data.

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• RRID
• 4 years ago - by Anonymous

Software tool for integration of spatial information in spatial transcriptomics data clustering.

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• SciCrunch
• 4 years ago - submitted by Simone Avesani