Curator Dashboard

TRUSST is reference database of human transcriptional regulatory interactions.TRRUST v2 is manually curated expanded reference database of human and mouse transcriptional regulatory interactions.

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• RRID
• 4 years ago - by Anonymous

Software tool for complexity analysis viral sequences.

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• SciCrunch
• 4 years ago - submitted by Jorge da Silva

Software library that enables use of structure based SMOG models of biopolymers with OpenMM.

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• RRID
• 4 years ago - by Anonymous

Software tool for analysis, visualization and animation of ribosome structures. Plugin for use with VMD that can automate download, structure alignment, analysis, visualization and animation of ribosome structures.

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• RRID
• 4 years ago - by Anonymous

Software tool interprets Verilog descriptions of programmable hardware and transforms these into combinations of small look-up tables as provided on FPGAs from Xilinx or Lattice.

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• SciCrunch
• 4 years ago - by Anonymous

Software Python scripts to plot neuroimaging results especially functional connectivity results.

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• RRID
• 4 years ago - submitted by Stephen Karl Larroque

Core complements services provided by BRC Genomics Facility.Working on collaborative model, protocol and method development by early adopters pave the way for larger scale production services.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software to control automated microscopes and microscope equipment in combination with multidimensional acquisition and analysis. Used for high speed image acquisition and processing.

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• RRID
• 4 years ago - by Anonymous

Software tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.

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• SciCrunch
• 4 years ago - by Anonymous

Software pipeline for assembly and analysis of highly heterozygous genomes. Used for diagnosis of hybrids, aneuploids, and other non standard architectures in genome assemblies.

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• SciCrunch
• 4 years ago - submitted by gabaldonlab Comparative Genomics

Software tool for marking ant motion trajectories dataset from video. Provided marking software, three data quality analysis scripts, and tracking performance evaluation tool.

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• SciCrunch
• 4 years ago - submitted by Xiaoyan Cao

Core at Miami Project to Cure Paralysis leverages PerkinElmer Opera Phenix Plus high content screening system to provide assay development and phenotypic screening. Facility is also equipped with PerkinElmer Janus G3 liquid handler, featuring modular and variable dispense heads, to automate screening workflows and enhance throughput. Core supports phenotypic and target-based assays. Phenotypic assays range from 2D to 3D, widefield to confocal, and antibody to dye based. It collaborates with users to develop customized assays and analytical pipelines tailored to their specific needs. Current specializations include neurite tracing, lipid droplet quantification, cell viability, morphological and kinetic analyses, phagocytosis, cell marker detection, cell adhesion, among others.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software metagenomics annotations pipeline that regularly enrich up-to-date ENA and MGnify metagenomics studies with metadata extracted from research articles in EuropePMC.

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• SciCrunch
• 4 years ago - submitted by Maaly Nassar

Software package includes new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC.Optimized library for reference based deconvolution of whole blood biospecimens assayed using Illumina HumanMethylationEPIC BeadArray.

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• SciCrunch
• 4 years ago - by Anonymous

Open Source portable FPGA place and route tool.

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• SciCrunch
• 4 years ago - by Anonymous

Flow cytometer as novel cell analyzer that leverages inherent benefits of flow cytometry and enables simultaneous measurement of up to 50 different characteristics of single cell.

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• RRID
• 4 years ago - by Anonymous

Whole slide scanner that scan glass slides to convert them to digital data. NanoZoomer S60 supports both brightfield imaging, fluorescence imaging and double size slides.

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• RRID
• 4 years ago - by Anonymous

OHAUS CS lightweight, portable, compact balance for use in laboratory, industrial, education and home use applications. CS offers great value without sacrificing accuracy for weighing jobs of 200g to 5000g.

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• RRID
• 4 years ago - by Anonymous

Open source parametric 3D modeler to design real life objects of any size. Parametric modeling allows modify your design by going back into your model history and changing its parameters.

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• SciCrunch
• 4 years ago - by Anonymous

Software tool provides annotation of non-synonymous single nucleotide variants in context of structural properties of resulting amino acid changes in corresponding proteins. Improved implementation of StructMAn, shipped in container form and extended to annotation of short in-frame indels and alterations arising as consequence of alternative splicing events. Produces range of structural features by combining information from experimentally resolved structures of many related proteins, which is unique feature of StructMAn family tools. Can also harness all protein structure models stored in AlphaFold Protein Structure Database.

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• SciCrunch
• 4 years ago - submitted by Alexander Gress