Curator Dashboard

Software pipeline to process ATAC-Seq data. Used for automated end-to-end quality control and processing of ATAC-seq and DNase-seq data.

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• RRID
• 3 years ago - by Anonymous

Core facility specializes in mass spectrometry-based proteomics with a commitment to quality, rigor, problem-solving, and innovation. Provides expert guidance.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides services such as Pronuclear Injection, Blastocyst Injection, Embryo and Sperm Cryopreservation, Strain Recovery and Rederivation. Provides assisted reproductive techniques such as IVF and ICSI used for strain recovery. Core facility to the university for creation and maintenance of all transgenic animal models, refinement and development of new transgenic techniques, as well as training center for research personnel.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides gene targeting and mouse embryonic stem cell technology for members of Rockefeller University, Memorial Sloan-Kettering Cancer Center and their collaborators.CRISPR and Genome Editing services include mouse genomic knock-out and knock-in, mouse conditional knock-out, establishing new ES lines for gene targeting services, establishing ES lines from mutant mouse embryos, preparing ES cells introduced from off campus resources for injection or other application, assisting in embryoid body culture and in vitro differentiation of ES cells, and purification and evaluation of DNA for pronuclear injection.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Facility dedicated to expression of innovative recombinant proteins for all in vitro and in vivo studies. Innovative technology developed by the platform, called FlexiBac, uses baculovirus / insect cell expression system.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool that scores positions in human genome in terms of their regulatory probability. Regulatory Mendelian Mutation score was created for relevance prediction of non-coding variations (SNVs and small InDels) in human genome (hg19) in terms of Mendelian diseases.

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• RRID
• 3 years ago - submitted by Max Schubach

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• NIF
• 3 years ago - by Anonymous

A reagent used for HTRF Perkin Elmer cisbio Catalog number 610SADLF

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• RRID
• 3 years ago - submitted by Joseph Salvino

Offers functional and structural analysis of protein complexes.Offers possibility to characterize all types of molecular interactions: ligand-target binding, protein-protein interactions, signal transduction, and signalling complexes. Staff members are skilled specialists in luminescence-based techniques and in receptor biology.Application portfolio includes Analysis of cell signalling, by measuring signal transduction;Ligand-target binding (pharmacological analysis, affinity, selectivity); Protein-protein interactions (oligomerization, effectors...); Activation of signalling pathways (G proteins, GRK, arrestins & internalization); Intracellular production of second messengers (cAMP, IP1, Ca2+); Phosphorylation of signalling proteins (ERK, AKT...); Measurement of global cell functions and of different cell parameters (proliferation, migration, invasion...).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Offers genomic technologies to academic laboratories and biotechnology companies.Application portfolio includes Whole genome (re)sequencing, including the identification of variants (SNVs, mutations, indels, CNVs);Targeted sequencing, for instance exomes; Transcriptome analyses (RNA-Seq, small RNA-Seq, microarrays), including in single cells (single-cell 3 RNA-seq); Determination of chromatin structure and dynamics (ChIP-Seq, FAIRE-Seq, Hi-C); Epigenetic analyses (ChIP-Seq, RRBS, Bisulphite-Seq);Genotyping (RAD-Seq, GBS, microarrays).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides integrated analysis workflow for analysis of mass spectrometry proteomics data for differential protein expression or differential enrichment.

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• RRID
• 3 years ago - by Anonymous

Software R package for exploration of single-cell and bulk T-cell/antibody immune repertoires. Framework for bioinformatics exploratory analysis of bulk and single-cell T-cell receptor and antibody repertoires.

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• RRID
• 3 years ago - by Anonymous

Software tool to detect regions that are affected by tissue damage, labelling defects, artifacts or errors in image acquisition, regions that are poorly registered, or where registration cannot be verified. Makes it easier for the user to explore the atlas hierarchy and decide on customized hierarchy level for investigation. QCAlign was developed to support QUINT workflow which supports spatial analysis of labelling in series of brain sections from mouse and rat based on registration to reference atlas.

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• RRID
• 3 years ago - by Anonymous

Web tool used to analyse PubMed search results. Text mining tool. Will query PubMed with your specified searchquery, get all abstracts and generate frequency tables. The first table will show journals in which your query is published the most.The second table will show the authors which are most active in the field of your query.The third table will show words that have been used most in the title and abstract of the articles.

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• RRID
• 3 years ago - by Anonymous

Web search tool to gain overview of set of articles retrieved by PubMed query. Used to support user driven summarization, drill down and browsing of PubMed search results. Value-added PubMed search engine for analysis and text mining.

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• RRID
• 3 years ago - by Anonymous

Web tool for assessing exposure and human health risks at contaminated sites. Fate and distribution of chemical pollutants in soil are calculated according to steady-state conservation of mass principles.Risks are calculated by comparing exposures with toxicological reference values and concentrations with toxicological or legal reference concentrations.

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• RRID
• 3 years ago - by Anonymous

Software tool contains set of models for simulating fate of chemicals in main environmental systems and in human body. Features include uncertainty and sensitivity analysis as well as consideration of pharmacokinetics.

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• RRID
• 3 years ago - by Anonymous

Web tool for aggregate consumer exposure assessment. Model is based on realistic product usage information obtained from surveys. Information on usage, frequency and amount of personal care products and household cleaning products in various European countries is included.

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• RRID
• 3 years ago - by Anonymous

Software R package for comprehensive visualization of genomic signal associations. Visualizes enrichment of genomic signals on specific target regions. Used to visualize e.g. how histone marks are enriched to specific sites.

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• RRID
• 3 years ago - by Anonymous

Software R package as visual exploratory tool on correlation matrix that supports automatic variable reordering to help detect hidden patterns among variables.

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• RRID
• 3 years ago - by Anonymous