Curator Dashboard

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• Resource
• NIF
• 3 years ago - by Anonymous

Web based transcription factor enrichment analysis. Web server ranks TFs associated with user-submitted gene sets. ChEA3 background database contains collection of gene set libraries generated from multiple sources including TF-gene co-expression from RNA-seq studies, TF-target associations from ChIP-seq experiments, and TF-gene co-occurrence computed from crowd-submitted gene lists. Enrichment results from these distinct sources are integrated to generate composite rank that improves prediction of correct upstream TF compared to ranks produced by individual libraries.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool as R implementation of NicheNet method to predict active ligand-target links between interacting cells. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest.

• Resource
• RRID
• 3 years ago - by Anonymous

Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3.

• Resource
• RRID
• 3 years ago - submitted by Samantha White

Rapid protein transfer apparatus that can transfer protein to membrane in 3 minutes.High performance western blotting transfer system designed to provide rapid transfers with high efficiency.

• Resource
• RRID
• 3 years ago - by Anonymous

One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool provides visualization techniques for clonal evolution. Available plots include shark plots as basic trees, showing phylogeny and optionally cancer cell fraction; dolphin plots as advanced visualization, showing phylogeny and development of CCFs over time; plaice plots as novel visualization, showing phylogeny, development of CCFs and development of remaining healthy alleles, influenced by bi-allelic events, over time. Provides algorithms for fully automatic interpolation of time points and estimation of therapy effect to approximate tumor's development in presence of few measured time points, as well as exploring alternative trees.

• Resource
• RRID
• 3 years ago - submitted by Sarah Sandmann

Universal utility for programming FPGAs. Compatible with many boards, cables and FPGA from major manufacturers (Xilinx, Altera/Intel, Lattice, Gowin, Efinix, Anlogic, Cologne Chip). Works on Linux, Windows and macOS.

• Resource
• RRID
• 3 years ago - by Anonymous

Software toolbox for synchronized dual camera acquisition. Library for acquisition of synchronized dual camera video. Videos are saved with alternate acquisition of frames what ensures equal number of frames.

• Resource
• RRID
• 3 years ago - by Anonymous

Software package to read, manipulate and visualize 'Pairwise mApping Format' data in R.

• Resource
• RRID
• 3 years ago - by Anonymous

Software package designed to call circular DNA from short read WGS data.Used to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates architecture of amplicon.Used to reconstruct structure of focally amplified regions using whole genome sequencing and validate it extensively on multiple simulated and real datasets, across wide range of coverage and copy numbers.

• Resource
• RRID
• 3 years ago - by Anonymous

Software Python package to visualize outputs of AmpliconArchitect in style of Circos plots. General circular visualizations of genomic regions. Used to visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos style images.

• Resource
• RRID
• 3 years ago - by Anonymous

Automatic cell counting instrument. Used to count blood cells.

• Resource
• RRID
• 3 years ago - by Anonymous

System that automatically captures and analyzes images of living cells around-the-clock for days, weeks, or months, while cells remain undisturbed inside standard tissue culture incubator. Kinetic, image-based measurements. Used for cell monitoring and surveillance, cell health and viability, migration and invasion, phenotypic cell based assays.

• Resource
• RRID
• 3 years ago - by Anonymous

Modeling document labels using Latent Dirichlet Allocation is component tool under Integrated Quality Assurance System of Camarines Sur Polytechnic Colleges which categorizes text of particular document and use it for auto-tagging.

• Resource
• RRID
• 3 years ago - submitted by Freddie Prianes

Software repository for Python programming language.Used to find and install software developed and shared by Python community.

• Resource
• RRID
• 3 years ago - submitted by Anita Bandrowski

Collection contains open and publicly funded data sets created by Brown University faculty and student researchers. Increasingly, publishers, and funders are requiring that protocols, data sets, metadata, and code underlying published research be retained and preserved, their locations cited within publications, and shared with other researchers and the public. The deposits here endeavor to be in line with FAIR Principles (Findable, Accessible, Interoperable, Reusable). If you would like to deposit data set into this collection for the purposes of citation/linking within publication and public dissemination, then please log in, zip up and upload your file, and request digital object identifier (DOI) for your data citation.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Repository of metadata and data that describes and provides access to diverse data sets generated by Arctic and Antarctic researchers.Metadata records follow ISO 19115 and Federal Geographic Data Committee standard formats to provide exchange with other data centres.Records cover wide range of disciplines from natural sciences and policy, to health and social sciences. The PDC Geospatial Search tool is available to the public and researchers alike and allows searching data using mapping interface and other parameters.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides open access to Climate and Earth System Data from scientists at the centre and their collaborators. Helps to make your data open, FAIR and visually appealing. Each dataset and source code in the Bolin Centre Database is assigned a unique DOI. This makes it easy to cite and find your data. If dataset has more than one version, each version will have its own DOI.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Data catalogue and repository for New Zealand's Biological Heritage National Science Challenge.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth