Curator Dashboard

Software tool to infer allele and haplotype specific copy numbers in individual cells from low coverage single cell DNA sequencing data. Integrates weak allelic signals across individual cells, powering strength of single cell sequencing technologies to overcome weakness. Includes global clustering of RDRs and BAFs, and rigorous model selection procedure for inferring genome ploidy that improves both inference of allele specific and total copy numbers.

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• 3 years ago - by Anonymous

Mammalian cell colony, spheroid and organoid counter. PC software operated colony counter that automates detection, counting and analysis of mammalian cell colonies in multi-well plates, Petri dishes and T25 flasks.

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• 3 years ago - by Anonymous

Online behavioral experiment platform.

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• 3 years ago - by Anonymous

Mouse genetics and laboratory animal resources in the Asia Pacific. Collaborative group of development, archiving/distribution, coordination of phenotyping and informatics of mutant mice in Asia. Facilitates access to mouse resources in Asia for use of mouse models for understanding genome function and improvement of human health.

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• 3 years ago - submitted by Edyta Vieth

Software tool to subset 10x Genomics BAM file based on tag, most commonly cell barcode tag.Takes 10x Genomics BAM file, CSV file defining subset of cells you want to isolate, and produces new BAM file with only alignments associated with those cells.Subsets BAM files output from CellRanger by tag which is usually cell barcode.

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• 3 years ago - by Anonymous

Software tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA, and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis.

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• 3 years ago - by Anonymous

Stable models to generate tertiary structures that mimic natural features including backbone, local and distal characteristics, found in real proteins.

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• 3 years ago - submitted by Mena Khalaf

Software tool to predict protein coding genes in fungal genome assembly. Performs gene prediction on given genome assembly and RNA-seq reads. Runs multiple gene predictors, evaluates all predicted genes, and assembles gene models that are highly supported by homology to known sequences.

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• 3 years ago - submitted by Gouthaman Puthan Purayil

Core performs high throughput assays for determination of proteins, peptides, hormones and other biochemical markers in support of preclinical and clinical research studies. Laboratory has equipment and capacity to perform standard immunoassays as well as multiplexed ELISAs. Provides standardized sample handling that upholds high quality control. Supports reduced investigator cost through batch analysis of samples and direct manufacturer pricing.

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• 3 years ago - submitted by Edyta Vieth

Core provides and supports gold standard of high quality mouse, rat and zebrafish modeling services for VAI investigators, collaborators and greater research community.Facility includes high containment barrier. All procedures are conducted according to the National Institutes of Health Guide for the Care and Use of Laboratory Animals. The Institute is accredited at the highest standard of care through the Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC) International.

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• 3 years ago - submitted by Edyta Vieth

Facility encompasses cryo-electron microscopes (Krios, Arctica), which are supported by expert staff and high performance computing cluster with extensive cloud capabilities.Provides wide range of cost effective and efficient biological EM services.

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• 3 years ago - submitted by Edyta Vieth

Cell sorter offers advanced automation technology with BD FACSChorus software and guides you through entire cell sorting process with its intuitive interface, on-screen instructions and tips and simple-to-read reports.

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• 3 years ago - by Anonymous

Software package for including transposable elements in differential enrichment analysis of sequencing datasets. Used for including transposable elements in differential expression analysis of RNA-seq datasets. RNAseq TE quantification tool.

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• 3 years ago - by Anonymous

Platform for archiving and sharing of primary data outputs from research on low dose radiation. Provides directory of bioresources and databases containing information and materials that investigators are willing to share. Supports creation of low dose radiation research commons.

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• 3 years ago - by Anonymous

Software CLI tool to verify workflow reproducibility.

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• 3 years ago - submitted by Hirotaka Suetake

Web application for browsing Yevis workflow registry.

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• 3 years ago - submitted by Hirotaka Suetake

Software CLI tool to support building and maintaining Yevis workflow registry.

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• 3 years ago - submitted by Hirotaka Suetake

Web application for managing and executing Workflow Execution Service (WES) services.

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• 3 years ago - submitted by Hirotaka Suetake

Software for standard implementation conforming to Global Alliance for Genomics and Health Workflow Execution Service API specification.

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• 3 years ago - submitted by Hirotaka Suetake

Software tool to interpret and interact with taxonomic profiles produced by different taxonomic profiler methods beyond standard metrics used by scientific community. Interpretable analysis and visualization of metagenomics based taxon abundance profiles.

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• 3 years ago - submitted by Varuni Sarwal