Curator Dashboard

Multi dimensional image viewer for Python. Used for browsing, annotating, and analyzing large multi dimensional images. Can be coupled to machine learning and image analysis tools enabling more user friendly automated analysis.

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• 4 years ago - submitted by Anita Bandrowski

Core provides access to light microscope systems to perform widefield, confocal, 2-photon/multiphoton, second harmonic generation, total internal reflection (TIRF), and high content imaging.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Platform for individuals who want to make their own data available for research. Used by people to join network with others who wish to contribute to vital research in partnership with and alongside leading scientists. Personal tool for saving and displaying medical information.

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• 4 years ago - submitted by Anita Bandrowski

Software R script for identifying x controls within t distance of each case based on weighted PCA data.

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• 4 years ago - by Anonymous

Project to promote and facilitate sharing of clinical trial data. Provides set of policies to set standards to enhance data availability and transparency in support of strong scientific research which aims to advance scientific and medical knowledge with goal of improving public health and healthcare delivery. Project has the final decision making rights regarding these policies and granting or denial of data requests, as per contractual agreements between the YODA Project and its partners.

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• 4 years ago - submitted by Anita Bandrowski

Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted.

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• 4 years ago - submitted by Anita Bandrowski

American healthcare analytics company established in 2008. Originally textbook marketing company, it came under scrutiny in May 2020 after it had provided large datasets of COVID-19 patients which were subsequently found to be extremely unreliable. The questionable data was used in studies published in The Lancet and The New England Journal of Medicine in May 2020. On 15 June 2020, company website was taken offline.

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• 4 years ago - submitted by Anita Bandrowski

Open source program for ImageJ/Fiji. Automated and multithreaded Sholl for direct analysis of fluorescent images and/or traced morphologies. Features quantifications based on curve fitting. Analysis of profiles obtained by other software is also possible.

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• 4 years ago - submitted by Elena Brivio

Software R package Themes for use with Shiny.

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• 4 years ago - submitted by Elena Brivio

Software R package to create interactive Shiny based web applications to visualise single cell data via visualising cell information and/or gene expression on reduced dimensions e.g. UMAP, visualising coexpression of two genes on reduced dimensions, visualising distribution of continuous cell information e.g. nUMI / module scores using violin plots / box plots, visualising composition of different clusters / groups of cells using proportion plots and visualising expression of multiple genes using bubbleplots / heatmap.Shiny Interactive Web Apps for Single-Cell Data.

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• 4 years ago - submitted by Elena Brivio

Software R package to add markdown helpfiles to shiny apps, using modal dialog boxes, with no need to observe each help button separately.

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• 4 years ago - submitted by Elena Brivio

Software R package with new, more intuitive visualization of concordant and discordant gene overlap where all regions in RRHO plots are meaningful. Used for identification of statistically significant overlap between gene expression signatures.

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• 4 years ago - submitted by Elena Brivio

Software package to generate area proportional Euler diagrams using numerical optimization that display set relationships (intersections, unions, and disjoints) with circles or ellipses. Area Proportional Euler and Venn Diagrams with Ellipses.

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• 4 years ago - submitted by Elena Brivio

Software R package for visualization of intersecting sets. Used for quantitative analysis of sets, their intersections, and aggregates of intersections. Visualizes set intersections in matrix layout and introduces aggregates based on groupings and queries.

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• 4 years ago - submitted by Elena Brivio

Japanese national university in Toyama Prefecture established in 1949. University of Toyama has three campuses, namely Gofuku, Sugitani, and Takaoka campuses.

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• 4 years ago - submitted by Edyta Vieth

Software pipeline for phasing and scaffolding polyploid genomes based on Hi-C data. Hi-C-based scaffolding algorithm that integrates pruning, partition, optimization and building functions to select contigs specific for polyploid genome assembly.

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• 4 years ago - by Anonymous

Software package for scalable de novo isoform discovery from single molecule PacBio reads. Contains tools to identify transcripts in PacBio single molecule sequencing data.

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• 4 years ago - by Anonymous

Non-redundant RefSeq protein records are currently provided for archaeal and bacterial RefSeq genomes, with exception of selected reference genomes, by NCBI prokaryotic genome annotation pipeline. This scope definition may change in the future to include additional RefSeq sub-kingdoms or other organism groups and some GenBank conceptual translation protein records may provide cross-links to RefSeq non-redundant proteins.

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• 4 years ago - by Anonymous

Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment.

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• 4 years ago - submitted by Jensen Palmer

Provides highly sensitive elemental quantification, including sample preparation, data analysis, and experimental guidance, through Inductively Coupled Plasma Mass Spectrometry (ICP-MS) technology.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth