Curator Dashboard

Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments.

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• RRID
• 3 years ago - by Anonymous

Software R package to implement model selection and multimodel inference based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc) from various model object classes. Package implements classic model averaging for given parameter of interest or predicted values, as well as shrinkage version of model averaging parameter estimates or effect sizes. Package includes diagnostics and goodness-of-fit statistics for certain model types including those of 'unmarkedFit' classes estimating demographic parameters after accounting for imperfect detection probabilities.

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• RRID
• 3 years ago - by Anonymous

A software tool to browse cell genomics. The UCSC Cell Browser is an interactive viewer for single-cell expression. You can find a few datasets converted at UCSC in the list on the left. You can also set one up yourself, by installing the package. Exporters to create a Cell Browser from your own data are integrated into Seurat or Scanpy and we provide one for CellRanger and for text files. We are very happy about bug reports or feedback: cells@ucsc.edu. Or open an issue in our GitHub Repo If you use the UCSC Cell Browser in your research, please cite our Bioinformatics paper. If you are also using data from a specific dataset we host, please also cite the original authors of that dataset (visible under 'Info & Download').

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Github repository for the paper "T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases" by Høye et al.

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• RRID
• 3 years ago - submitted by Eirik Høye

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• NIF
• 3 years ago - by Anonymous

Central data repository containing clinical, research, and administrative data sourced from UNC Health Care System. Both Epic and legacy hospital systems are represented, with ability to query most data elements as far back as mid-2004. Used to mine UNC Health Care data to aid with trial recruitment, retrospective analyses, inter-institutional data sharing and much more.

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• RRID
• 3 years ago - by Anonymous

Faith-based, not-for-profit healthcare organization and clinical care network in Miami-Dade, Broward, and Palm Beach counties. Baptist Health has 11 hospitals and in excess of 100 physician practices and outpatient facilities.

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• RRID
• 3 years ago - submitted by Ahmad Ozair

Web based tool to visualize gene expression and metadata annotation distribution throughout single cell dataset or multiple datasets. Interactive viewer for single cell expression. You can click on and hover over cells to get meta information, search for genes to color on and click clusters to show cluster specific marker genes.

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• dkNET
• 3 years ago - submitted by Maryann Martone

We aligned single-nucleus atlases of middle temporal gyrus (MTG) of 5 primates (human, chimp, gorilla, macaque and marmoset) and identified 57 consensus cell types common to all species. We provide this resource for users to: 1) explore conservation of gene expression across primates at single cell resolution; 2) compare with conservation of gene coexpression across metazoa, and 3) identify genes with changes in expression or connectivity that drive rapid evolution of human brain.

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• dkNET
• 3 years ago - submitted by Maryann Martone

Software package to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM).

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• RRID
• 3 years ago - submitted by Samantha White

Part of Ion OneTouch System. Employs magnetic bead technology to isolate template positive Ion Sphere particles that can be loaded directly onto Ion semiconductor chip delivering automated, highly reproducible enrichment with every run.

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• RRID
• 3 years ago - by Anonymous

Automated system used for generation of template positive Ion Sphere Particles for semiconductor sequencing. Performs template amplification as part of manual workflow for Ion PGM, Ion Proton, Ion S5, and Ion S5 XL systems. Provides scalable template preparation for all Ion semiconductor chips. Instrument has small footprint and fits easily on any bench top.

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• RRID
• 3 years ago - by Anonymous

Open source web tool that identifies research outputs organizations have supported, analyzes their openness including OA policy compliance, and then streamlines taking action to make results more open. Covers almost any type of policy, e.g funder, university, and national. This includes policies that require submission dates, grant IDs, or other complex criteria to determine compliance.

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• RRID
• 3 years ago - by Anonymous

Leading collaborative interdisciplinary organization that advances research, education, and training in quantum science and engineering. Helps to unify and promote research in quantum science and engineering in the Pittsburgh area. PQI members have faculty appointments from Carnegie Mellon University, Duquesne University, and the University of Pittsburgh in physics, chemistry, and engineering disciplines. Connects with team based science intitiatives and shared facilities.Resources and Facilities for Quantum Research include Carnegie Mellon Nanofabrication Facility,Center for Research Computing, Gertrude E. and John M. Petersen Institute of NanoScience and Engineering (PINSE), Materials Characterization Facility, Pittsburgh Supercomputing Center,QCFD (Quantum Computing/Computational Fluid Dynamics).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Focused on cell signalling pathways, provides access to reagents and services involving kinase and ubiquitin targets and associated substrates and interacting proteins. Provides expertise and assistance in projects development. Offers services for protein generation and antibody development.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Part of Einstein�s Center for Epigenomics and Illumina CSPro (certified service provider) laboratory, offers massively-parallel sequencing (MPS) including fully-automated library preparation, quality control and assurance, and number of assays to study the genome/epigenome. Data analytical services are provided by Computational Genomics Facility.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Part of Einstein Center for Epigenomics and Illumina CSPro (certified service provider) laboratory, offers massively-parallel sequencing (MPS) including fully-automated library preparation, quality control and assurance, and number of assays to study the genome/epigenome. Data analytical services are provided by Computational Genomics Facility.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Focused on cell signalling pathways, provides access to reagents and services involving kinase and ubiquitin targets and associated substrates and interacting proteins. Provides expertise and assistance in projects development. Offers services for protein generation and antibody development.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Leading collaborative interdisciplinary organization that advances research, education, and training in quantum science and engineering. Helps to unify and promote research in quantum science and engineering in the Pittsburgh area. PQI members have faculty appointments from Carnegie Mellon University, Duquesne University, and the University of Pittsburgh in physics, chemistry, and engineering disciplines. Connects with team based science intitiatives and shared facilities.Resources and Facilities for Quantum Research include Carnegie Mellon Nanofabrication Facility,Center for Research Computing, Gertrude E. and John M. Petersen Institute of NanoScience and Engineering (PINSE), Materials Characterization Facility, Pittsburgh Supercomputing Center,QCFD (Quantum Computing/Computational Fluid Dynamics).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core offers spatial analysis which combines single-cell, spatial RNA sequencing, high-throughput microscopy, and quantitative image data analysis to enable large-scale spatial genomics and proteomics studies. Services include Spatial Transcriptome and Proteome analysis (GeoMx and CosMx), multiplex analysis (nCounter and Isoplexis), BSL2 laboratory, Confocal and Non-confocal image (Operetta), cell raft technology, sample preparation.

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• RRID
• 3 years ago - by Anonymous