Curator Dashboard

Core provides equipment for flow cytometric analysis, full service cell sorting, training, and dissemination.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Offers microscopy services, consultation, and support for application of novel microscopic and spectroscopic methods and advanced image analysis techniques for study of macromolecules, cellular dynamics and nano-scale characterization of bio-materials. Provides collection of customized biological fluorescence microscopes and small-animal imaging devices to study biological processes with high spatial and temporal resolution in whole organisms and in living cells down to single molecule detection level with nanometer accuracy. Located in basement and second floor of CNSI building, two optical suites designed to house microscopes with the required environment control (low vibration, air-filtered, air-conditioned and light-tight) and services. Services include Wide-field Fluorescence Imaging Microscopy (on a limited basis), Confocal One-Photon and Two-Photon Laser Scanning Microscopy, (both point scanning and spinning disk), Fluorescence Correlation Spectroscopy (FCS), Fluorescence Resonance Energy Transfer (FRET), microscopic and macroscopic Fluorescence Lifetime Imaging (FLIM) with Time-Correlated-Single-Photon-Counting (TCSPC) and Near-Infrared (NIR) Detection, Stimulated Emission Depletion laser-scanning microscopy (STED) (a super-resolution technique), both microscopic and macroscopic (small animal) spectral unmixing and laser capture microdissection.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 26,2025. Imaging Core Facility located within National Cancer Institute of Mexico. Provides scientific and technical support in imaging and image analysis to any community. Imaging technologies in ADMiRA include: Confocal, Widefield, Super-Resolution, Lightsheet, FIB-SEM, Laser Microdisection, and Automated digital scanning.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Open index of scholarly works, authors, venues, institutions, and concepts. Catalog of scholarly papers, researchers, journals, and institutions along with all the ways they are connected to one another.

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• SciCrunch
• 4 years ago - by Anonymous

Supervised ensemble machine learning classifier. Classification performance benchmark scripts.

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• SciCrunch
• 4 years ago - submitted by David Chen

A software to display, record and data processing of physiological signals. DataLyser is custom-built software developed at Walter Reed Army Institute of Research, Silver Spring, MD. It is not copyrighted.

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• RRID
• 4 years ago - by Anonymous

Facility comprises Next Generation Sequencing, Single Cell Technologies and Data Management teams. Offers professional project counseling, library preparation, and sequence production support for Max Delbruck Center for Molecular Medicine and Berlin Institute of Health at Charite institutes in Berlin.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files.

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• RRID
• 4 years ago - by Anonymous

Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.

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• SciCrunch
• 4 years ago - by Anonymous

Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space.

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• RRID
• 4 years ago - submitted by Samantha White

Software tool for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing or metatranscriptomics experiments.

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• RRID
• 4 years ago - submitted by Fan Jiang

Software viral contig verification tool. Classifies contigs as viral, non-viral or uncertain, based on gene content. Also for non-viral contigs it can optionally provide plasmid/non-plasmid classification.

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• RRID
• 4 years ago - submitted by Fan Jiang

Software tool as naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus, with confidence estimates for each assignment.

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• RRID
• 4 years ago - submitted by Fan Jiang

Software tool for visualising de novo assembly graphs. By displaying connections which are not present in contigs file, opens up new possibilities for analysing de novo assemblies. Used for interactive visualization of de novo genome assemblies.

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• RRID
• 4 years ago - submitted by Fan Jiang

Software tool as metagenome assembler that exploits high accuracy of recent data. De novo metagenome assembler, based on haplotype resolved de novo assembler for PacBio Hifi reads. Workflow consists of optional read selection, sequencing error correction, read overlapping, string graph construction and graph cleaning.

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• RRID
• 4 years ago - submitted by Fan Jiang

Software tool for image quality. Used for labeling quality of images and labeling center point of 3D RI images. Used to mange 3D RI cell images taken from holotomography.

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• RRID
• 4 years ago - submitted by Jong Hyun Kim

Software package to improve the ease of studying and integrating scATAC-seq datasets. Developers may use this package to obtain data for analysis of multiple tissues, diseases, cell types, or developmental stages. It can also be used to obtain data for validation of new algorithms.

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• RRID
• 4 years ago - by Anonymous

Software package to improve studying tumour microenvironment with single cell sequencing. Developers may use this package to obtain data for validation of new algorithms and researchers interested in tumour microenvironment may use it to study specific cancers more closely. Curated collection of scRNAseq datasets sequenced from tumours.

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• RRID
• 4 years ago - by Anonymous

Software tool as framework for adaptive optics data analysis. Object oriented framework for organizing data, metadata and code related to adaptive optics experiment.

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• RRID
• 4 years ago - submitted by Sara Patterson

Systems biology platform for integrating, mining and analyzing microbiome experiments.Data discovery and analysis web based resource that empowers researchers to fully leverage experimental variables to interrogate microbiome datasets. Used to mine complex microbiome and metagenome studies.

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• RRID
• 4 years ago - by Anonymous