Curator Dashboard

Simple PC application for present audio/visual stimuli for fmri paradigms.

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• SciCrunch
• 4 years ago - submitted by Ivan Gumin

Software R package to correct systematic errors in nanopore sequencing reads of gene libraries. Retrieves true consensus sequences of variants identified by barcode, needing only few reads per variant.

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• SciCrunch
• 4 years ago - by Anonymous

Software for Berthold ORION II (LB 965) microplate luminometers.

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• RRID
• 4 years ago - by Anonymous

Project to help to end opioid addiction. Addiction Long-term Initiative or NIH HEAL Initiative, to speed scientific solutions to stem national opioid public health crisis. Initiative is funding hundreds of projects nationwide. Researchers are taking variety of approaches to tackle opioid epidemic through understanding, managing, and treating pain, and also through improving prevention and treatment for opioid misuse and addiction.

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• RRID
• 4 years ago - submitted by Anita Bandrowski

Software to identify each cell’s top neighbours in each batch separately instead of entire cell pool with no accounting for batch. Nearest neighbours for each batch are then merged to create final list of neighbours for cell. Aligns batches in a quick and lightweight manner.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Software Python tool for approximate nearest neighbors. Provides Python implementation of Nearest Neighbor Descent for k-neighbor-graph construction and approximate nearest neighbor search.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Software R package for similarity and distance quantification between probability functions. Information Theory and Distance Quantification with R. Provides framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Software Python framework designed to work with multimodal omics data. Aims to provide convenience and speed to its users enabling standardised analysis while staying flexible and expandable. Muon stands on shoulders of and integrates with annotated data object specification and scanpy library for single cell analysis in Python.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Software Python package implemented Graph Linked Unified Embedding framework for single-cell multi-omics data integration.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Software R package to work with sequence motifs in analysis of genomics data. These include methods to annotate genomic regions or sequences with predicted motif hits and to identify motifs that drive observed changes in accessibility or expression. Functions to produce informative visualizations of obtained results are also provided.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Software package for prediction of protein backbone and sidechain torsion angles from NMR chemical shifts.

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• RRID
• 4 years ago - by Anonymous

Provides service for production and purification of custom antibodies.Primary services include immunization of mice and rabbits to make mouse and rabbit monoclonal antibodies to select targets. Primary screening of hybridomas will be conducted using standard ELISA technology and positive lines will be preserved for cloning. Supernatants containing antibody selected as positive will be made available to investigators for secondary analyses in their labs (Westerns, immunofluorescence, functional assays). Investigator selected lines will be cloned, isotyped, and adapted to serum free culture for future production of high titer antibody if investigator requires large quantities of antibody. Standard purifications will be conducted as needed, and various modifications (fluorochrome, enzyme, biotin) are also provided as Antibody Core services.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software algorithm for integrating multiple high dimensional datasets. Port of harmony R package.

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• RRID
• 4 years ago - submitted by Kenneth Chiou

Centralized, community driven platform for creation, exploration, and storage of cell annotations for single cell RNA sequencing datasets.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Software package as interactive visualization tool for functional genomics data. Interactive visual analytics for functional genomics data.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Software automated, terascale, cloud based image analysis pipeline for preprocessing and cross modal, nonlinear registration between volumetric datasets with artifacts. Automatic terabyte scale cross modal brain volume registration.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Provides molecular and anatomical foundational framework for study of brain function and disorders.Comprehensive Center on Human and Non-Human Primate Brain Cell Atlases with goal to build reference brain cell atlases that will be used throughout research community.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Software application to examine multimodal data from thousands of cells across 3 mammalian species.

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• RRID
• 4 years ago - submitted by Edyta Vieth

Software package provides cross modality image registration pipeline to support whole brain mapping projects. Contains three modules: (1) image preprocessing and global registration, (2) Coherent Landmark Mapping (CLM) based automatic registration, and (3) optional semi-automatic refinement.

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• RRID
• 4 years ago - submitted by Edyta Vieth