Curator Dashboard

Center includes studies for responsiveness and resistance to anti cancer drugs. Committed to training students and postdocs, promoting junior faculty and ensuring that data and software are reproducible, reliable and publicly accessible. Member of National Cancer Institute’s Cancer Systems Biology Consortium.

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• 4 years ago - submitted by Sarah Arena

Consortium provides guidelines for highly multiplexed tissue images. Standard that applies best practices developed for genomics and other microscopy data to highly multiplexed tissue images and traditional histology. Data and metadata standards consistent with Findable, Accessible, Interoperable, and Reusable (FAIR) standards that guide data deposition, curation and release.

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• 4 years ago - submitted by Sarah Arena

Gathers together imaging and omic datasets into molecular maps of normal and diseased tissue from human and animal models, with emphasis on cancer. Used to access datasets, educational curriculum and talks, and recommended methods and software.

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• SciCrunch
• 4 years ago - by Anonymous

Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data.

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• 4 years ago - by Anonymous

Software package for directed single cell fate mapping in diverse scenarios, including regeneration, reprogramming and disease. Automatically detects initial, intermediate and terminal populations, predicts fate potentials and visualizes continuous gene expression trends along individual lineages. Applied to lineage traced cellular reprogramming data, predicted fate probabilities correctly recover reprogramming outcomes.

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• 4 years ago - by Anonymous

Software tool to discover order of gene expression and functional events during cell state transitions at single cell resolution. Works on any single cell trajectory or pseudo time ordering of cells to discover genes that act as on/off switches between cell states and ordering at which these switches take place. Takes any single-cell pseudo-time trajectory and determines precise order of gene expression and functional event changes over time.

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• 4 years ago - by Anonymous

Web portal that explains technique of Diffeomorphic Mapping and Shape Analysis.

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• 4 years ago - submitted by Edyta Vieth

Center for collaboration of biologists, chemists, and engineers to develop fluorescence technologies for biomedical applications used in drug discovery, neuroscience, biomedical imaging and cancer biology programs. Technologies launched from MBIC include the Cyanine Dyes (Cy3, Cy5, Cy7), High Content Screening (Cellomics, Inc), Difference In-Gel Electrophoresis (DIGE), Qdots for In-vivo imaging, Fluorogen Activating Proteins, and DNA Nanotags.

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• 4 years ago - submitted by Edyta Vieth

Joint computational research center with Carnegie Mellon University and University of Pittsburgh. Provides university, government and industrial researchers with access to several systems for high performance computing, communications and data storage available to scientists and engineers nationwide for unclassified research.

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• 4 years ago - submitted by Edyta Vieth

Repository for co-ordinating work on ontologies for Brain Data Standards Project. Automate data driven cell type ontology development for Brain Data Standards initiative.

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• 4 years ago - submitted by Edyta Vieth

Platform to search neurons of interest by neuron anatomy, morphology, and connectivity patterns. Used to Explore morphology and connectivity features of neurons of interest, Upload neuron (swc file or eswc file) and calculate morphology features, Search similar neurons, Explore 3D visualization of neurons, Explore cross species atlas. Open source pan-neuron table of morphology and connectivity.

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• 4 years ago - submitted by Edyta Vieth

Software Python package for reading and writing of image data in Neuroglancer precomputed format. Used to read and write Neuroglancer datasets programmatically.

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• 4 years ago - submitted by Edyta Vieth

Software cross platform mobile application that supports 2D/3D/4D image visualization, multi-morphometry annotation, proofreading, interactive imaging system controlling, and distributed collaboration.

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• 4 years ago - submitted by Edyta Vieth

EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases.

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• 4 years ago - submitted by Edyta Vieth

Software package to streamline workflow of imaging data management, visualization, reconstruction and collaboration, and data sharing.

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• 4 years ago - submitted by Edyta Vieth

Labels provide resource to isolate and identify mouse brain anatomical structures. Cell type specific transgenic mice and an MRI atlas were used to adjust and further segment the labels. Highly segmented anatomical labels in the adult mouse brain common coordinate framework.

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• 4 years ago - submitted by Edyta Vieth

BRAIN Initiative Cell Census Network data catalog. Provides access to all major data sets of the BICCN with descriptions.

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• 4 years ago - submitted by Edyta Vieth

MoticEasyScan digital slides scanner.

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• 4 years ago - by Anonymous

Software package to provide set of functions designed to make working with strings easy. Consistent wrappers for common string operations.

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• SciCrunch
• 4 years ago - by Anonymous

Software R package for bindings to liblwgeom library.

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• SciCrunch
• 4 years ago - by Anonymous