Curator Dashboard

MIBiG is genomic standards consortium project and biosynthetic gene cluster database used as reference dataset. Provides community standard for annotations and metadata on biosynthetic gene clusters and their molecular products. Standardised data format that describes minimally required information to uniquely characterise biosynthetic gene clusters. MIBiG 2.0 is expended repository for biosynthetic gene clusters of known function. MIBiG 3.0 is database update comprising large scale validation and re-annotation of existing entries and new entries. Community driven effort to annotate experimentally validated biosynthetic gene clusters.

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• dkNET
• 3 years ago - submitted by Maryann Martone

Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades.

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• dkNET
• 3 years ago - submitted by Maryann Martone

Software tool as variant caller for both single and paired sample variant calling from BAM files. Implements amplicon bias aware variant calling from targeted sequencing experiments, rescue of long indels by realigning bwa soft clipped reads.Novel and versatile variant caller for next generation sequencing in cancer research.

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• RRID
• 3 years ago - by Anonymous

Software R package as CNV detection tool for targeted NGS panel data. Extension of cn.mops package. Used for detecting copy number variations in targeted next generation sequencing panel data. Suitable to use for clinical geneticists for routine clinical diagnostics.

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• RRID
• 3 years ago - by Anonymous

Software tool for detecting structural variations from cell free DNA containing low dilutions of circulating tumor DNA.

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• RRID
• 3 years ago - by Anonymous

Software Python command line tool for post processing of structural variant calls. Framework for rapid generation of structural variant consensus, to visualize genetic impact and context as well as process both genome and transcriptome data.

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• RRID
• 3 years ago - by Anonymous

Software tool that suppresses errors in next generation sequencing data by using unique molecular identifers to amalgamate reads derived from same DNA template into consensus sequence.

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• RRID
• 3 years ago - by Anonymous

Software tool that runs on BAM or CRAM file and generates low level information about sequencing data at specific nucleotide positions. Its outputs include observed bases, readcounts, summarized mapping and base qualities, strandedness information, mismatch counts, and position within the reads.

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• RRID
• 3 years ago - by Anonymous

Software R package contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in creation of these plots. Functions to create publication quality plots.

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• RRID
• 3 years ago - by Anonymous

Manufacturer of mass spectrometry instrumentation used in biomedical and environmental applications. Originally started by scientists from the University of Toronto Institute for Aerospace Studies, it is now part of Danaher Corporation with the SCIEX R&D division still located in Toronto, Canada.

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• RRID
• 3 years ago - by Anonymous

Microsoft system includes integrated digital inverted benchtop microscope for four-color fluorescence, transmitted-light, and color imaging. Provides interchangeable optics with autofocus, single-click multi-channel image acquisition.3.2 Megapixels, monochrome, CMOS camera. Offers software for acquisition, analysis, and automated cell counting.

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• RRID
• 3 years ago - by Anonymous

A large-scale fMRI dataset conducted at ultra-high-field (7T) strength at the Center of Magnetic Resonance Research (CMRR) at the University of Minnesota. The dataset consists of whole-brain, high-resolution (1.8-mm isotropic, 1.6-s sampling rate) fMRI measurements of 8 healthy adult subjects while they viewed thousands of color natural scenes over the course of 30–40 scan sessions. While viewing these images, subjects were engaged in a continuous recognition task in which they reported whether they had seen each given image at any point in the experiment. These data constitute a massive benchmark dataset for computational models of visual representation and cognition, and can support a wide range of scientific inquiry.

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• dkNET
• 3 years ago - submitted by Maryann Martone

Portal for large scale fMRI dataset conducted at ultra high field strength at Center of Magnetic Resonance Research at University of Minnesota. Dataset consists of whole brain, high resolution fMRI measurements of healthy adult subjects while they viewed thousands of color natural scenes over course of scan sessions. While viewing these images, subjects were engaged in continuous recognition task in which they reported whether they had seen each given image at any point in experiment. These data constitute massive benchmark dataset for computational models of visual representation and cognition, and can support wide range of scientific inquiry.

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• dkNET
• 3 years ago - submitted by Maryann Martone

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• NIF
• 3 years ago - by Anonymous

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• NIF
• 3 years ago - by Anonymous

Genomics Core Facility provides services including Whole-genome and transcriptome sequencing of non-model organisms, Amplicon sequencing for metagenomic studies, Differential expression analysis of mRNA and miRNA, Degradome sequencing, ChIP and RIP sequencing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Fluorescence activated cell analyzing instrument by BD Biosciences. Allows for the simultaneous detection of up to 30 parameters and 28 colors.

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• RRID
• 3 years ago - by Anonymous

LabChart data analysis software creates platform for all of your recording devices to work together, allowing you to acquire biological signals from multiple sources simultaneously and apply advanced calculations and plots as your experiment unfolds.Used for collection and analysis of signals. Recommended for researchers and educators who want the capabilities without modules and automation of specific measurements.

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• RRID
• 3 years ago - by Anonymous

Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components.

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• RRID
• 3 years ago - submitted by Samantha White

Web tool for identifying CRISPR target sites and evaluating their specificity. CRISPR Target Finder uses TagScan and algorithms based on large scale analyses of CRISPR-Cas9 specificity in cell lines and animals published to date to identify potential off target cleavage sites for given CRISPR target.

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• RRID
• 3 years ago - submitted by XU WEN