Curator Dashboard

Facility for sequencing samples for the MD Anderson Cancer Center.

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• RRID
• 1 year ago - by Anonymous

Portal providing access to all JGI genomic databases and analytical tools, sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms. The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web.

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• SciCrunch
• 16 years ago - by Anonymous

Platform for reproducible research. Code base for publishing data. For merging science and cyberinfrastructure pathways. Data Infrastructure Building Block (DIBBS) initiative to build scalable, open source, web-based, multi-user platform for reproducible research enabling creation, publication, and execution of tales – executable research objects that capture data, code, and complete software environment used to produce research findings. To enable researchers to define and create computational environment to manage complete conduct of computational experiments and expose them for analysis and reproducibility.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Software for configuring behaviour sensors and devices that are a part of the WEAR Basestation. Hardware and Software Platform, Champalimaud Center for the Unknown. insufficient information

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• RRID
• 1 year ago - submitted by Chrissy Weber-Schmidt

The Oklahoma Brain Tumor Foundation (OKBTF) is a nonprofit organization that provides education, advocacy and support for Oklahomans with brain tumors and their families to improve their quality of life and help find a cure. Founded by Nancy Thomason after the death of her son Cade Thomason to a brain stem PNET tumor on February 17, 2000, she vowed to fight the disease in honor and memory of her son Cade. OKBTF is dedicated to meeting the needs of Oklahoma families, caregivers and patients affected by primary brain or central nervous system tumors. We work to provide for needs through education, advocacy, research and service. Whatever your needs, whether financial, physical, mental or spiritual, we will work with you to fight the battle. Here you will find many of the services we offer in support of families just like yours, who are confused, hurting and just wanting straight answers. Feel free to browse around, get to know us, see what we are doing to help and send us your comments or questions... We are here for you.

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• SciCrunch
• 16 years ago - by Anonymous

Free, cloud-based platform for publishing, sharing, and processing standardized neurophysiology data, primarily using the Neurodata Without Borders (NWB) format. Supported by the BRAIN Initiative, it enables researchers to collaborate, reuse datasets, and adhere to FAIR data principles.

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• SciCrunch
• 7 years ago - submitted by Jeffrey Grethe

Core provides analysis of proteins, peptides, lipids, polar metabolites and small molecules by high resolution/high mass spectrometry. Targeted and hypothesis free analysis are offered combined with relative quantitation based on either label free, tandem mass tags or metabolic labelling. Acquisition tools include Data Dependent (DDA) and Data Independent (DIA).

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

A small, upper level ontology that is designed for use in supporting information retrieval, analysis and integration in scientific and other domains. BFO is a genuine upper integration in scientific and other domains. Thus it does not contain physical, chemical, biological or other terms which would properly fall within the coverage domains of the special sciences.

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• SciCrunch
• 16 years ago - by Anonymous

Collection of chemical compounds and associated information that were automatically extracted by text mining content of PubMed and PubChem databases. Unifies chemical lists from metabolomics, systems biology, environmental epidemiology, occupational expossure, toxiology and nutrition fields.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Provides equipment and team support to the workflow of all things geo-spatial from primary data collection using suite of different sensors and platforms to analysis that includes:Advanced mapping and geo-spatial analysis that leverage Uncrewed Aerial Vehicle (UAV) or drone-based sensors that use LiDAR, hyperspectral, thermal, orthoimagery, and Structure from Motion; High precision mapping and analysis using GPS and GNSS; Acoustic Doppler Profiles of rivers, reservoirs, and lakes;Data visualization and cartography;Remote sensing using active and passive sensors;Geo-spatial analysis, data development, and management;High Performance Computing infrastructure that leverages all of the above using open source and proprietary software.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

The IHWG Cell and DNA Bank was established as a shared resource to support the scientific projects of the 13th International Histocompatibility Workshop (IHWS). The Research Cell Bank (RCB), located in Fred Hutchinson Cancer Research Center in Seattle, WA, maintains the IHWG inventory. This comprehensive inventory includes B-Lymphoblastoid Cell Lines (B-LCL) from previous International Workshops, HLA heterozygous and homozygous donors, selected families, and individuals of diverse population groups. The RCB maintains stocks of purified DNA derived from these cell lines, as well as DNA reference panels that provide an extensive array of HLA and HLA-related sequence polymorphisms. The RCB also provides cloned HLA genes and B-LCL transfected with selected HLA genes, which are available on a limited basis.

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• SciCrunch
• 16 years ago - by Anonymous

Software as flexible pipeline for environmental DNA metabarcoding analysis of 16S/18S rRNA, ITS and COI marker genes. Performs reads’ pre-processing, clustering to (M)OTUs and taxonomy assignment for 16S rRNA and COI marker gene data. Allows users to explore alternative algorithms for specific steps of pipeline without need of complete re-execution.

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• SciCrunch
• 7 years ago - submitted by Haris Zafeiropoulos

Private research university in Evanston, Illinois, United States. Established in 1851 to serve the historic Northwest Territory, it is the oldest chartered university in Illinois. The university has its main campus along the shores of Lake Michigan in the Chicago metropolitan area.

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• SciCrunch
• 15 years ago - submitted by Timothy Tsui

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A publicly available tool that contains data from the BforSMA clinical study ( ClinicalTrials.gov, NCT00756821 ), a pilot study to identify candidate biomarkers in blood or urine from a wide range of Spinal Muscular Atrophy (SMA) patients that associate with disease severity. It is hoped that the identification of candidate biomarkers will lead to clinical efficacy and longitudinal natural history studies to verify these markers and enable their use as validated pharmacodynamic markers, longitudinal progression markers, or surrogate endpoint measures in clinical trials.

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• SciCrunch
• 16 years ago - by Anonymous

Provides servies in mass spectrometry, proteomics, metabolomics and lipidomics. Services include Thermo Orbitrap Elite and Thermo QExactive HF Orbitrap microcapillary LC-MS/MS:Protein identification, Post-translational modification site mapping,Relative quantification: Label-free, SILAC, TMT, etc.;AB/SCIEX 5500 QTRAP LC-MS/MS:Polar metabolomics profiling,13C/15N metabolic flux analysis;Thermo QExactive Plus/HF Orbitrap LC-MS/MS:Untargeted Lipidomics profiling, Untargeted Metabolomics Profiling.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core provides expertise in optical microscopy, electron microscopy, and image analysis for neuroscience research. The platform is open to all researchers. Offers access to advanced technologies, including electron microscopy, confocal microscopy, two-photon imaging, and super-resolution microscopy.

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• RRID
• 1 year ago - submitted by Olivier Renaud

Stem cell and bone marrow register in the United Kingdom, managing and recruiting donors internationally for patients who require stem cell transplants. A database of tissue-typing results of all prospective donors is maintained. A national cord blood program consisting of both a cord blood bank and a research institute provides donated umbilical cord blood for use in clinical transplants and research. Research is conducted in immunogenetics, immunotherapy, bioinformatics (curating the World Health Organisation HLA Nomenclature database, ensuring that all new tissue types are consistently documented), and immune reconstitution.

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• SciCrunch
• 16 years ago - by Anonymous

Core facility that creates transgenic and gene-targeted mice using pronuclear microinjection, targeted ES cell microinjection, and CRISPR/Cas9 gene editing. Offers mouse rederivation services to create specific pathogen free mice or to rederive cryopreserved mouse lines. Additionally, embryo and sperm cryopreservation services are available to provide long-term storage of valuable mouse strains or stocks. Services include:Pronuclear Microinjection,ES Cell Microinjection,ES Cell Electroporation CRISPR/Cas9,In Vitro Fertilization,Sperm Cryopreservation,Embryo Cryo,Embryo Rederivation.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core provides services and R&D in cell engineering and gene expression modifications by using retro- and lentivirus, adenovirus, adeno-associated virus, shRNA/MIR and CRISPR-Cas9 genome editing methods.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Non-profit organization dedicated exclusively to education and support for the issues of prevention and recovery of brain injury in the state of Utah. The Brain Injury Association of Utah provides Help, Hope and Healing through Education, Facilitation and Advocacy. If you are one of the thousands of people who are faced with traumatic brain injury, you may be scared, and confused. We have resources, connections and programs that can help offer hope, clarity and sense of direction when it comes to living life to the fullest possibilities after traumatic brain injury. You are not alone. Together, we will not only survive, but thrive through the challenges ahead. At the Brain Injury Association of Utah you will find: * What To Expect * Basics of Brain Injury * Continuum of Care * Emotional Stages after Brain Injury * Facts About Brain Injury * Cognitive Brain Skills & Clues About Brain Injury * Glascow and Ranchos Coma Scale * Types and Levels of Brain Injury BIAU has coalitions with major hospitals, governmental agencies, and rehabilitation centers to provide a network of support, information, and help. Your support will strengthen this network and make a significant difference in the lives of those who have suffered a brain injury.

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• SciCrunch
• 15 years ago - by Anonymous