Curator Dashboard

Stand-alone software package for translation of individual tumor genomes for precision cancer medicine. PCGR interprets primarily somatic SNVs/InDels and copy number aberrations. The software extends basic gene and variant annotations from the Ensembl's Variant Effect Predictor (VEP) with oncology-relevant, up-to-date annotations, and produces interactive HTML reports intended for clinical interpretation.

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• 3 months ago - by Anonymous

Software tool as natural language interface integrated with MDV that allows users to generate high-quality interactive visualisations through natural language commands. ChatMDV employs a retrieval-augmented generation (RAG) pipeline combined with large language models (LLMs) to translate user queries into reproducible Python code and interactive output. Module to add chatbot functionality to query Multi-Dimensional Viewer projects.

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• 3 months ago - submitted by Stephen Taylor

Web tool for analyzing, annotating and sharing multi-dimensional data. Visualisation platform used for spatial analysis.

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• 3 months ago - submitted by Stephen Taylor

Database offers integrated multi-omic data for patients across 33 cancer types. It encompasses gene expression, DNA methylation, somatic mutations, proteomic profiles, and chromatin accessibility, drawing from TCGA, GTEx, and CPTAC projects. Users can compare gene expression, DNA methylation, and protein levels between tumor and normal tissues, identifying differentially expressed genes and proteins, and examining gene-to-gene correlations. Provides oncogene mutation profiles and allows for survival analysis based on gene expression and methylation, linked to clinical parameters. Facilitates exploration of multi-omic correlations, such as gene expression with DNA methylation, and their variations with mutation status. Extends its analytical capabilities to include six major oncoviruses, offering insights into their impact on gene expression, methylation, and patient survival.

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• 3 months ago - by Anonymous

Web application made for plotting genomic data. Used for genomic composite visualization for bioinformaticians and bench scientists to visualize and analyze signal occupancy across genomic regions.

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• 3 months ago - submitted by Olivia Lang

Automated instrument designed to extract, purify, and quantify nucleic acids (DNA/RNA) from diverse biological samples, preparing them for Next-Generation Sequencing (NGS). It accelerates laboratory workflows, allowing 20 minutes of hands-on time to yield NGS ready samples in ~2 hours.

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• 3 months ago - by Anonymous

MRI-based atlas package for the titi monkey brain that includes a single subject atlas (UC Davis Titi monkey Neuroimaging Atlas (UCD-TiNA)), alongside a population atlas (UCD-TiNA_group) and a manually segmented atlas compilation (UCD-TiNA_mac).

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• 3 months ago - by Anonymous

Engineered for controlled polymerase activity, Accuris Hot Start Taq is bound with a monoclonal antibody that blocks enzyme activity. This allows reactions to be set up at room temperature without the risk of non-specific amplification.

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• 3 months ago - submitted by Liqun Zhang

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• 3 months ago - submitted by Liqun Zhang

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• 3 months ago - submitted by Liqun Zhang

For sample lysis and complete bisulfite conversion/cleanup of DNA from FFPE, blood, cultured cells, or tissue samples, optimized for methylation analysis

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• 3 months ago - submitted by Liqun Zhang

For concentration and purification of circulating cell-free DNA from plasma or serum

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• 3 months ago - submitted by Liqun Zhang

For simultaneous purification of viral RNA and DNA from plasma, serum, and cell free body fluids

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• 3 months ago - submitted by Liqun Zhang

Project to compare two approaches for the construction of longitudinal predictive models, which were used here to estimate the conversion of mild cognitive impairment (MCI) to AD.

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• 3 months ago - submitted by Albert Crowley

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• 3 months ago - submitted by Carlos Platero Dueñas

Public engineering school in Montreal, Canada, affiliated with the Université du Québec system. Founded in 1974, it specializes in applied engineering education and research, with a strong focus on cooperative education (mandatory internships), industry collaboration, and practical, hands-on training for bachelor, master, and doctorate students.

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• 3 months ago - submitted by Edyta Vieth

Core provides genomics services including next-generation sequencing, gene expression, and genotyping. It enables studies on human disease mechanisms, cancer, and rare diseases.

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• 3 months ago - submitted by Jacob Teske

Core provides equipment for the fabrication and advanced characterization of cyber-physical microdevices, particularly printed cyber-physical microdevices. Provide students and researchers with environment where engineers receive training with advanced skills in the analog, digital and mixed domains.

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• 3 months ago - by Anonymous

Automated microscopy system for high-plex, subcellular spatial proteomics. System integrates automated microscope, fluidics unit for automated staining, and analysis software. It utilizes cyclic immunofluorescence with EpicIF technology to image, remove signals, and restain tissues to map proteins at single-cell resolution. System is developed by Canopy Biosciences, a Bruker Company, and is often used alongside AI-powered data analysis tools to classify cell phenotypes and visualize tissue architecture.

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• 3 months ago - submitted by Jacob Teske

Software R package to enable rapid reference mapping and annotation of new scRNA-seq data across the spectrum of normal and malignant hematopoietic contexts. Single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations.

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• 3 months ago - submitted by David Lahr