Curator Dashboard

Software tool for large scale co-phylogenetic analyses on several thousands of taxa. Faster than DistPCoA and numerically stable on large datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package contains lightweight C implementation of name collating BAM file input and BAM file output.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tools for common BAM file manipulations.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for large scale co-phylogenetic analyses on several thousands of taxa. Allows for rapid and much more thorough computation and analyses of large co-phylogenetic datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web analytics tool for detection of variants from assembly. Used to detect and analyze structural variants from genome assembly by comparing it to reference genome.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web application for visualizing pathogen evolution.Interactive web app for visualizing phylogenomic data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Sotware tool designed to run Process S simulations on Slow Wave Activity profiles from human EEG recordings.Produces set of sleep homeostat parameters which can be used to describe and differentiate individual sleepers, such as short vs long sleepers, early vs late, etc.Sleep research experiment manager, with facility for reading, displaying, and manual and semi-automatic scoring EEG recordings in edf format; conventional PSD and EEG Microcontinuity profiles; artifact detection; Independent Component Analysis; basic sleep analysis NREM-REM cycle detection.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to track evolution from sequence and serological data. Provides collection of commands which are designed to be composable into larger processing pipelines.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software to get assembly statistics from FASTA and FASTQ files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for specific, sensitive, and speedy trimming of NGS reads.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to prevent code duplication. Support code for NGS copy number algorithms. Generates count of coverage of each allele ACGT at that location given any filter settings.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application as medical image viewer.Able to load series of special images stored in DICOM format for review. Able to query and fetch DICOM images from archive nodes (also called PACS) over the network. Designed to run under Linux.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Facility offers custom sequencing services from DNA/RNA extractions to sequencing using Illumina and Oxford Nanopore platforms. Projects examples include bulk RNAseq, 3\'RNASeq, Single Cell transcriptomics (10X Genomics), Genome sequencing, and amplicon sequencing (ie 16SRNA, genotyping). Services include experimental design and bioinformatics data analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Leica ST5010 Autostainer XL provides reproducible, consistent high quality staining, and increased workload throughput compared to manual staining.

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• RRID
• 3 years ago - by Anonymous

Software tool for simulation of antigen experienced adaptive immune receptor repertoire datasets for benchmarking of machine learning methods.

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• RRID
• 3 years ago - submitted by Chakravarthi Kanduri

Database of human regulatory elements like enhancers and promoters, and their inferred target genes which is embedded in GeneCards, human gene compendium. Associations between regulatory elements and target genes were based on multiple sources of linking molecular data, along with distance.

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• RRID
• 3 years ago - submitted by Melanie Weigert

Core provides instrumentation for light and fluorescence based microscopy, including epifluorescence, confocal, and super-resolution imaging.Provides access to and training on basic and advanced light microscopy techniques. Expertise and advice is available for the design of experiments involving these techniques.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides expert bioinformatics, analytical, and data science consulting and analysis solutions. Offers support for the management and analysis of large scale biological datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Sliding microtome produces sections for human paraffin sectioning applications.Microtome has enclosed micrometer feeding system with ergonomically positioned object head close to the user. Running sledge can be locked in 11 positions by using sledge brake.

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• RRID
• 3 years ago - by Anonymous

Code used for data processing, variant impact predictor modelling and result analysis. Used to improve prediction results to predict the impact of amino acid variants. Extended linear regression-based predictor to explore whether incorporating data from alanine scanning, widely-used low-throughput mutagenesis method, would improve prediction results.

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• RRID
• 3 years ago - by Anonymous