Curator Dashboard

Software to create and extract conda packages of various formats.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for large scale systematic epigenome imputation. ChromImpute takes existing compendium of epigenomic data and uses it to predict signal tracks for mark-sample combinations not experimentally mapped or to generate a potentially more robust version of data sets that have been mapped experimentally.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool designed to simplify Multivariate analysis (correspondence analysis) of codon and amino acid usage. It also calculates standard indices of codon usage.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software pipeline for taxonomic classification of contigs and metagenome-assembled genomes. Contig Annotation Tool and Bin Annotation Tool for the taxonomic classification of long DNA sequences and metagenome assembled genomes of both known and unknown microorganisms, as generated by contemporary metagenomics studies.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software designed to assist hospitals and public health officials with understanding hospital capacity needs as they relate to the COVID pandemic. CHIME enables capacity planning by providing estimates of total daily and running totals of inpatient hospitalizations, ICU admissions, and patients requiring ventilation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Collection of software tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin Ig sequences, and reconstructing germline sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open Source software modular Java libraries for cheminformatics.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Computer Assisted Medical Intervention Tool Kit helps researchers and clinicians to easily and rapidly collaborate in order to prototype CAMI applications, that feature medical images, surgical navigation and biomechanical simulations.Open source, cross-platform generic tool, written in C++, which can handle medical images, surgical navigations and biomechanical simulations.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software workflow engine dedicated to data synchronization and processing. Software automates the update cycle and the supervision of the locally mirrored databank repository.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tools for manipulating Common Assembly Format files text format for describing sequence assemblies,that can be downloaded from the Sanger ftp site.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software multi-purpose reflection library developped by Technogerma Systems France and then by Tegesoft. Provides extra layer of flexibility to programs, and allows them to fully expose their data structures at runtime.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to use BioMAJ providing biomaj-cli.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package for analyzing, processing and visualizing multi-dimensional microscopy images. Multipurpose postprocessing tool for bioimaging. Can be used for simple visualization of multi-channel temporal image stacks to complex 3D rendering of multiple channels at once.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software statistical tool for identifying genetic associations. Used for genome wide association studies in large cohorts.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source framework for bioinformatics written in Objective-C. Provides Cocoa and GNUstep programmers with full suite of APIs for handling and manipulating biological sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application as simultaneous Bayesian inference of alignment and phylogeny. Used to estimate multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences. to explore the joint space of alignment and phylogeny given molecular sequence data. BAli-Phy version 3 is model based co-estimation of alignment and phylogeny. Version 3 is substantially faster for large trees, and implements covarion models, additional codon models and other new models. Implements ancestral state reconstruction, allows prior selection for all model parameters, and can also analyze multiple genes simultaneously.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for constructing compacted de Bruijn graph from sequencing data.Parallel algorithm that distributes the input based on minimizer hashing technique, allowing for good balance of memory usage throughout its execution.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Bibliographic and reference management software. Allows to search, edit, and sort bibliographic records.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software bibliography processing backend for LaTeX biblatex package. Supports unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. BibTeX replacement for users of BibLaTeX.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for building minimal perfect hash function. Designed to handle large scale datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth