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Software statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only a small fraction of complex traits, which allows us to avoid repetitive variance component estimation procedure, resulting in a significant amount of increase in computational time of association mapping using mixed model.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as general purpose Gibbs sampler for finding motifs in set of DNA or protein sequences.Takes as input a set containing sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. Used to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software programming library for C/C++ to read/write EDF+/BDF+ files.It also reads old-type EDF/BDF files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software de novo adapter prediction algorithm for small RNA sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package provides DICOM medical image files manipulation and conversion tools. Command line utilities for creating, modifying, dumping and validating DICOM files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python scripts to convert CTD files into other formats such as Galaxy, CWL.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software extensible open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform DICOM RT viewer.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software as Bax file decoder and data compressor.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to simulate process of transmitting X-rays through phantom objects. Reconstructs original phantom image from projections. Has wide array of image analysis and image processing functions.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Java program for analyzing and visualizing rooted phylogenetic trees and networks.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software to support biomedical image computing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python library and software package for fast parsing and querying of VCF and BCF files and illustrate its speed, simplicity and utility. Used for variant analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software for minimal but powerful thread pool in ANSI C.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to generate BED coverage tracks from BAM files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software gives your command-line tools a CTD-compatible interface. Module for enabling tools with CTD reading/writing, argument parsing, validating and manipulating capabilities.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ Library for reading and writing CIFTI-2 and CIFTI-1 files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Comprehensive antibiotic resistance database. Bioinformatic database of resistance genes, their products and associated phenotypes.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software novel secondary structure prediction method based on conditional log-linear models, a flexible class of probabilistic models which generalize upon SCFGs by using discriminative training and feature-rich scoring. Used for sequence prediction.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software for DICOM training and testing,Demonstration and research image archives,Image format conversion from scanner with DICOM network access,DICOM image viewing and slide making, DICOM image selection, (limited) editing, and splitting and merging of series, Advanced scriptable image modification, filtering, forwarding and conversion, DICOM caching and archive merging, DICOM web access for viewing and data management (scriptable),Connection to Lua IDE for all sorts of DICOM manipulation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth