Curator Dashboard

Open source whole genome association analysis toolset, designed to perform range of basic, large scale analyses in computationally efficient manner. Used for analysis of genotype/phenotype data. Through integration with gPLINK and Haploview, there is some support for subsequent visualization, annotation and storage of results. PLINK 1.9 is improved and second generation of the software.

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• RRID-Legacy
• 5 years ago - by Anonymous

Centralised service facility for flow cytometry. Supports users in purification and analysis of (cell) samples using flow cytometry, FACS-based experiments from selection of experimental approach, provision of proven protocols and reagents, to performance of cell sorting as a service, equipment training and assistance with sample FACS-based analysis. Offers evaluation of FACS data and provides digital licences for common analysis software.

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool to provide color schemes for maps and other graphics designed by CARTO.Implementation of CARTOcolor palettes in R. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative.

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• RRID-Legacy
• 5 years ago - by Anonymous

Core provides centralized services, consultation, training and technical support to advance transgenic animal genotyping and cardiovascular, metabolic and behavioral phenotyping research.

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• RRID
• 3 months ago - by Anonymous

An extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package for statistical analysis of phenotypic data.Tool kit for standardized analysis of high throughput phenotypic data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Core provides access to analytical instrumentation for the investigation of material properties. Facility specializes in high-resolution imaging and chemical analysis through electron microscopy (SEM, TEM, STEM) and X-ray spectrometry and diffraction (XPS, XRD). Supports interdisciplinary research across engineering, chemistry, physics, and biology by offering comprehensive instrument training, technical support, and scientific expertise tailored to specific experimental systems. Provides resources for sample preparation, instrumentation for nanoscale research, including the only aberration-corrected Scanning Transmission Electron Microscope (STEM) in the Sacramento region, which is equipped with specialized in-situ holders for dynamic experimentation. AMCaT operates Environmental Scanning Electron Microscope (ESEM) allowing for the study of materials under variable pressure and humidity conditions. Provides high-precision XRD systems optimized for crystallography and thin-film analysis.

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Project aims to promote data sharing, archiving, and reuse among researchers who study human development. Focuses on creating tools for scientists to store, manage, preserve, analyze and share video and related data.

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• SciCrunch
• 13 years ago - by Anonymous

Provides equipment including wide field and confocal microscopes, flow cytometry analyzers and sorters, shared histology equipment, and PC workstations for data analysis.Provides services such as software training, access to analysis software, and help with experimental planning and post acquisition analysis.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Desktop software for processing, fitting, and analysing isothermal titration calorimetry (ITC) data. It imports raw data from MicroCal, TA Instruments/NanoAnalyze, and PEAQ ITC project files, as well as integrated heat data and FT-ITC project files. The software supports baseline correction, injection integration, interaction-model fitting, global analysis, uncertainty estimation, advanced thermodynamic analyses, and publication-figure export on macOS, Windows, and Linux. Desktop application for analysis of ITC data.

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• RRID
• 2 months ago - submitted by Frederik Theisen

The National Psoriasis Victor Henschel BioBank is a collection of biological samples and clinical information used by qualified scientists to further the field of psoriasis genetics. Once completed, the National Psoriasis BioBank will be the largest collection of psoriasis DNA samples in the world, moving us closer to understanding the causes of psoriatic diseases, discovering more and better treatments and finding a cure. The BioBank is currently collecting DNA from people with and without psoriasis and/or psoriatic arthritis. Simply by donating your DNA����??a blood sample and a swab of your cheek cells����??and providing us with your medical history, you can help us find a cure. Samples will be processed and stored at a private laboratory and not at the National Psoriasis Foundation. The National Psoriasis BioBank is part of the Genetic Alliance BioBank (GA BioBank), a centralized repository for the collection, storage and distribution of biological samples (including DNA, serum, cells and tissues) and clinical data for genetic researchers.

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• SciCrunch
• 16 years ago - by Anonymous

Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core provides instrumentation and expertise for single-cell analysis in models of ocular development, degeneration, infection, and inflammation. Instrumentation includes a Cytek Aurora full-spectrum flow cytometer, a Cytek Aurora CS cell sorter, and a Luminex 200 multiplex suspension array system, together with an Agilent wound scratch tool, an Agilent Lionheart XL plate imager, and a CellZScope for real-time barrier physiology. Services include assisted and independent instrument use, training, panel and experiment design, sample preparation, and data analysis, with particular expertise in high-autofluorescence ocular tissues.

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• RRID
• 2 months ago - submitted by Adrian Filiberti

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software providng a method based on Bayes? theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Interactive portal provides datasets, across variety of cell types, for LD biology, including transcriptional profiles of induced lipid storage, organellar proteomics, genome-wide screen phenotypes, and ties to human genetics. Provides comprehensive picture of genes and pathways affecting lipid droplet biology, including gene expression, proteomics, and LD morphology phenotypes, by integrating multiple relevant data types.

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• dkNET
• 5 years ago - submitted by Ko-Wei Lin

The Mitochondrial Function and In Vivo Imaging (MF-II) Core provides specialized expertise, advanced instrumentation, and comprehensive services for assessing mitochondrial function, metabolism, cardiopulmonary physiology, and in vivo structure and function. The Core supports cardiovascular, pulmonary, and vascular research through high-resolution metabolic and mitochondrial analyses, noninvasive imaging, hemodynamic assessment, and established preclinical disease models. The MF-II Core works collaboratively with investigators to provide experimental design consultation, technical expertise, data acquisition, and analysis to generate high-quality, reproducible data.

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• RRID
• 2 months ago - submitted by Peng Zhang

An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human.

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• SciCrunch
• 16 years ago - by Anonymous

Nonprofit organization with mission to work with companies and governments to build open, trustworthy data ecosystem. They work with range of organisations, governments, public bodies and civil society to create world where data works for everyone.

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• RRID-Legacy
• 5 years ago - by Anonymous

BIOSZEN is a free and open-source R package and Shiny application for reproducible biological data analysis and visualization. It supports statistical testing, normalization, multiple-testing correction, customizable plots, and microbial growth-curve characterization, including parameters such as µMax, AUC, ODmax, lag time, and related growth metrics. BIOSZEN is designed to provide both an accessible graphical workflow and reproducible R-based analysis.

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• RRID
• 2 months ago - submitted by Benjamín Szenfeld