Curator Dashboard

Software R package provides functions and classes to compute, handle and visualise incidence from dated events for defined time interval. Dates can be provided in various standard formats.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package extends fitdistr function to help the fit of parametric distribution to non-censored or censored data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package to scrape data from Fitbit to generate graphs.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides functions for demographic and epidemiological analysis in Lexis diagram, i.e. register and cohort follow-up data. In particular representation, manipulation, rate estimation and simulation for multistate data - the Lexis suite of functions, which includes interfaces to 'mstate', 'etm' and 'cmprsk' packages. Contains functions for Age-Period-Cohort and Lee-Carter modeling and function for interval censored data and some useful functions for tabulation and plotting, as well as number of epidemiological data sets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for compute multivariate location, scale, and correlation estimates based on Tukey's biweight M-estimator.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for data objects in R to render as HTML tables using JavaScript library DataTables. DataTables library has been included in this R package.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for geodesic distance between phylogenetic trees and associated functions.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides functions for design and analysis of dose finding experiments. Used for multiple contrast tests, fitting non-linear dose-response models, calculating optimal designs and implementation of MCPMod methodology.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides multivariate tools to analyze comparative data. Analysis of comparative evolutionary data. Used for investigating phylogenetic signal in biological traits.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Softwar R package for comparative analysis of protein structures. Used to process, organize and explore protein structure, sequence and dynamics data. Used to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. Enables statistical and graphical power of R environment to work with biological sequence and structural data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for estimation, testing and regression modeling of subdistribution functions in competing risks.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides functions to reconstruct, generate, and simulate synchronous, asynchronous, probabilistic, and temporal Boolean networks. Provides also functions to analyze and visualize attractors in Boolean networks.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides memory efficient S4 classes for storing sequences externally.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package implementing bee swarm plots. Bee swarm plot is one-dimensional scatter plot like "stripchart", but with closely packed, non overlapping points.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for high-throughput adaptive immune receptor repertoire sequencing analysis. In particular, immunoglobulin sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for multivariate data analysis. Used for analysis of one-table, two-table, three-table and K-table.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package to parse Illumina Sequence Analysis Viewer files, access data, and generate QC plots.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating Sequence Alignment Map, FASTA, binary variant call and compressed indexed tab-delimited files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth