Curator Dashboard

Software tool as versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package as Nanopore read de-multiplexer.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria. Used for identification of acquired antimicrobial resistance genes in whole-genome data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package as Java based common sequence file format reader and sequence file manipulation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package to support gene set enrichment analysis, network topology analysis.Can be integrated into other pipeline or simultaneously analyze multiple gene lists. The user-friendly output report allows interactive and efficient exploration of enrichment results.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package to perform 1, 2 and 3D real and complex-valued wavelet transforms, nondecimated transforms, wavelet packet transforms, nondecimated wavelet packet transforms, multiple wavelet transforms, complex-valued wavelet transforms, wavelet shrinkage for various kinds of data, locally stationary wavelet time series, nonstationary multiscale transfer function modeling, density estimation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package infers V genotype of individual from immunoglobulin repertoire sequencing data like AIRR-Seq, Rep-Seq. Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among sample sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package usability wrapper around snow for easier development of parallel R programs. This package offers e.g. extended error checks, and additional functions. All functions work in sequential mode if no cluster is present or wished. Package is also designed as connector to the cluster management tool sfCluster, but can also used without it.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for basic wavelet routines for time series 1D, image 2D and array 3D analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package as collection of plotting and table output functions for data visualization. Results of various statistical analyses that are commonly used in social sciences can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, generalized linear models, mixed effects models, principal component analysis and correlation matrices, cluster analyses, scatter plots, stacked scales, effects plots of regression models including interaction terms. This package supports labelled data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling comprehensive phylogenetic tree for all named species.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Softare R package as implementation of the t-SNE algorithm.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for modeling and monitoring of time series of counts, proportions and categorical data, as well as for modeling of continuous-time point processes of epidemic phenomena.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package used to compute near optimal low-rank singular value decomposition of massive data sets with high accuracy. Provides several randomized matrix algorithms such as randomized singular value decomposition (rsvd), randomized principal component analysis (rpca), randomized robust principal component analysis (rrpca), randomized interpolative decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot functions are provided.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides environment for Time-Frequency analysis of 1-D signals.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides computational framework for analyzing mutations in immunoglobulin sequences. Immunoglobulin Somatic Hypermutation Analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for aggregating ranked lists, especially lists of genes. RRA method uses a probabilistic model for aggregation that is robust to noise and also facilitates the calculation of significance probabilities for all the elements in the final ranking.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web server for R with documented API to interface between R and the server. The documentation contains the Rook specification and details for building and running Rook applications.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package finds the k nearest neighbours for every point in a given dataset in O(N log N) time using Arya and Mount's ANN library (v1.1.3).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth