Curator Dashboard

Software package to facilitate large scale analysis, using both rooted and unrooted trees.Used for dating gene duplications and optimizing gene family trees.Used for inferring duplication dates from gene trees automatically and can also be used as exploratory analysis tool for evaluating alternative hypotheses.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for merging paired-end reads via novel empirically derived models of sequencing errors. Used for merging paired-end reads and removing adapters. Corrects errors and ambiguous bases and assigns quality scores for merged bases that accurately reflect the error rates.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Hosts makerspaces, labs, and promotes design based frameworks toward iteration and innovation. Acts as open intersection of university departmental collaboration and provides access to low barrier prototyping tools. Supports FSU student, staff, and faculty research initiatives.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Local Run Manager DNA Amplicon analysis module aligns amplicon reads against reference specified in the manifest file. Variants are called for the targeted regions.

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• RRID
• 3 years ago - submitted by Quetzally Medina

Software video centric package for direct video manipulation. Semi supervised animal pose estimation algorithm, Bayesian post processing approach and deep learning package. Improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools.

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• RRID
• 3 years ago - submitted by Kevin Chavez Lopez

Core is CLIA certified/CAP accredited laboratory specializing in high complexity genetic and serological clinical testing and research. Provides inpatient and outpatient diagnostic testing services as well as support for clinical trial and clinical research activities for physicians, researchers and industry clients. The AZClinCore has aided in development of novel genetic testing and clinical trial protocols as well as providing evaluations for new technology and testing platforms. Supports end-to-end clinical testing as well as reference lab services.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web based platform that enables data discovery from curated historical and on going oceanographic sequencing efforts. Enables discovery and integration of oceanographic ‘omics, environmental and physiochemical data layers. Used to centralize and standardize contextual data associated with major marine 'omic datasets. Used for marine microbiology to discover and analyze interconnected 'omics and environmental data.

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• RRID
• 3 years ago - by Anonymous

Designs and develops neurocognitive and behavioral assessment tools and technologies. Provides clinicians and researchers with leading-edge technologies for improved neurocognitive and behavioral evaluation and management capabilities. Provides CNS Vital Signs which is reimbursable assessment procedure that utilizes scientifically validated, objective, and reliable computerized neuropsychological tests to evaluate neurocognitive status of patients and covers a range of mental processes from simple motor performance, attention, memory, to executive functions. CNS Vital Signs is available as both web/cloud platform and local platform.

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• RRID
• 3 years ago - by Anonymous

Web browser for analysis of proteomic data. ShinyApp interface generated in R and RStudio.

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• RRID
• 3 years ago - by Anonymous

AIA immunoassay analyzer offers automation for immunoassay testing with flexible expansion capabilities. AIA-900 features: 90 tests/hour throughput; Load 10 racks on board; Load up to 5 tests/patient; First result in 18 minutes; Random access; Continuous processing; Simple touch screen operation; Bar coded primary tube sampling; Clot detection; Unit Dose Test Cup; Automated pretreatment; Automated dilution from 2 to 1000.

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• dkNET
• 3 years ago - submitted by Xiaoxia Duan

Software Python package to compute Euler Characteristic Curves of point cloud or image data.

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• RRID
• 3 years ago - submitted by Davide Gurnari

Independent research evaluation firm, based in the U.S. and Canada. Provider of research analytics services and data. Provides science research evaluation and analytics to assess science and technology activities. Headquartered in Montréal, Canada, Science-Metrix is known for independent bibliometric analysis and research evaluation and bibliometric and informetrics expertise. Science-Metrix was an early adopter of Elsevier’s abstract database Scopus and has worked closely with Elsevier. Elsevier has acquired Science-Metrix Inc. in 2018.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Facility is shared resource laboratory providing comprehensive suite of services to support research needs in flow cytometry. Offers conventional and full spectral cytometry for multi-parametric analysis, as well as multiparameter fluorescence activated cell sorting.

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• RRID
• 3 years ago - by Anonymous

Portal that aggregates tools that assist users ascertain FAIR-ness. Offers guidance to discover standards and repositories in FAIRsharing, which should be used to make data FAIR, as well as signpost other resources that enable FAIRness.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Platform for researchers to economically create and manage digital health programs. Platform built for research management and digital interventions. Helps researchers collect data and engage participants.

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• dkNET
• 3 years ago - by Anonymous

Photometrics acquisition software to capture, save and publish images and movies. Allows users of color and monochrome cameras to capture high quality images and videos from their microscope or lens system.

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• RRID
• 3 years ago - by Anonymous

Software Python package for analysis of dynamic fluorescence microscopy data.

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• RRID
• 3 years ago - by Anonymous

Web tool for exploration and sharing of mass spectrometry based proteomics data. Used for analysis and sharing of proteomics data, data visualization, export of plots in SVG format, assessment of experimental quality by correlation matrix and profile plot. User can analyze domain structure, AlphaFold predicted structure, reported interactors, relative expression, disease and pharmaceutical links, and mutagenesis information on all selected hits.

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• RRID
• 3 years ago - by Anonymous

Facility provides infrastructure and support for investigators to undertake single crystal X-ray structural studies. Provides instrumentation, training, and collaboration for Protein characterization, including dynamic light scattering, differential scanning calorimetry, bio-layer interferometry, and circular dichroism; Binding studies using isothermal titration calorimetry; Robotic crystallization, incubators, UV, and digital microscopes;Robotic imaging; Diffraction data collection and processing; Structure determination and analysis; Molecular modeling; Small angle X-ray scattering. Staff is available to train researchers to use equipment and to assist with project development and research.

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• SciCrunch
• 3 years ago - submitted by Craig Praul

Sartorius Cell Culture Facility delivers hands-on training in cell culture to students, faculty, staff, and external personnel, while providing researchers across numerous Penn State disciplines access to the lab environment.

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• SciCrunch
• 3 years ago - submitted by Craig Praul