Curator Dashboard

Multiple sequence alignment method with reduced time and space complexity.Multiple sequence alignment with high accuracy and high throughput. Data analysis service for multiple sequence comparison by log- expectation.

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• SciCrunch
• 13 years ago - by Anonymous

System equipped with DNP (Dynamic Nuclear Polarization) used primarily to dramatically boost the sensitivity of nuclear magnetic resonance (NMR) spectroscopy.It allows researchers to study complex molecular structures, materials, and biological systems that are normally difficult or impossible to observe. Console: Avance III HD; Magnet: Ascend; Field Strength:600 MHz Wide-bore; Software: TopSpin 3.8 on Alma 9.4; Probe: 3.2mm HCN LTMAS for DNP; 3.2mm HX LTMAS for DNP; 1.3mm HCN very-fast MAS.

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• SciCrunch
• 5 months ago - submitted by Edyta Vieth

An ontology of amino acids and their properties. Inferred version.

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• SciCrunch
• 13 years ago - by Anonymous

3D reference atlas to use with online datasets or as standalone resources. Can be used to analyze, visualize, and integrate multimodal and multiscale datasets in 3D. Intensity and shape population average template brain serves as basis of reference space and coordinate system. Average was constructed at 10 um voxel resolution by interpolating high resolution serial two photon tomography images from young adult C57BL/6J mice. Using multimodal reference data, entire brain was directly parcellated in 3D, labeling every voxel with brain structure from Allen Mouse Reference Atlas Ontology. In the 2017 release, the parcellation spanned 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures.

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• RRID-Legacy
• 6 years ago - submitted by Lydia Ng

Spectrometer used for advanced chemical, biological, and materials research. It allows scientists to determine the atomic-level structure, dynamics, and interactions of molecules. Console: Avance Neo; Magnet: Ascend; Field Strength: 800 MHz; software:TopSpin 4.4.1 on CentOS 7; Probe: 5mm QXI-F solution; 5mm TXI solution; 4.0mm gradient hr-MAS; 3.2mm Efree; 2.5mm Tri-gamma MAS; 1.9mm MAS; 1.3mm MAS; 0.7mm ultra-fast MAS.

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• SciCrunch
• 5 months ago - submitted by Edyta Vieth

Ontology that is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).

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• SciCrunch
• 13 years ago - by Anonymous

Software tool for identification of cross-linked peptides from mass spectra. Used for analysis of chemically cross-linked protein complexes. Used to analyze both novel and existing data sets.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core facility that collects and provides specimens and longitudinal clinical data from patients with digestive diseases. Specimens collected and processed by the core currently include blood, surgical resections, endoscopic biopsies, and stool. Clinical information is stored in a database and linked to specimens and data obtained from these specimens.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.

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• SciCrunch
• 13 years ago - by Anonymous

Software python package for reading Portable Encapsulated Projects or PEPs in python.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software open-source Python library that makes it easy to work with geospatial data. It extends the popular data analysis library, Pandas, by allowing you to perform spatial operations on geometric shapes like points, lines, and polygons.

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• RRID
• 4 months ago - by Anonymous

Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc.

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• SciCrunch
• 13 years ago - by Anonymous

Initiative to develop community, and establish internationally sustained data and model management service to European Systems Biology community. Web accessible repository for storing and sharing data, models, protocols and publications relating to systems biology research projects.Repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) data, operating procedures and models.Contains data, SOPs models, publications and other research assets from large research programmes and independent projects, including SysMO consortium, ERASyAPP and Digital Salmon. Public service for users to upload and publish research assets.

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• NIF
• 6 years ago - submitted by Maryann Martone

Core offers proteomics, metabolomics, and lipidomics services.Core specialises in working with precious and low-input samples including single-cell proteomics, deep visual proteomics from FFPE tissue, and integrated multiomics from a single sample. Every project is supported from experimental design through to full bioinformatic analysis and biological interpretation.Proteomics: from bulk expression to single-cell and spatial resolution. Metabolomics: precise identification and isotope tracing of metabolic pathways.Lipidomics: high-accuracy profiling of cellular lipid landscapes and signalling. Speciality: Spatial, Single-Cell and Integrated Multiomics: proteins, metabolites and lipids from the same precious sample.

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• SciCrunch
• 4 months ago - submitted by Edyta Vieth

An application ontology for microRNAs.

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• SciCrunch
• 13 years ago - by Anonymous

Core provides resources for imaging model organisms, tissue, cells, biomaterials, and artificial structures and houses equipment including almost every light microscopy imaging modality presently available. Cell culture facilities are also available nearby as well as other routine items necessary for biological imaging and material imaging. This facility has been designated Nikon Centers of Excellence, thus providing unique opportunity for training, demonstration, instrument development, and research.We excel in use of telemicroscopy through use of remote imaging sessions, remote control of all instruments, and remote data analysis sessions available to all users.Provides training to all users that plan to conduct experimentation. Following an initial consultation in which experimental requirements, expected outcomes, and careful scrutiny of feasibility, training and/or access is arranged through the Director.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core offers research instrumentation for hands-on use to researchers. Provides molecular biology, analytical, and imaging instruments to serve RI’s biomedical scientists totaling 3800 sq. ft. in the URI College of Pharmacy building.

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• RRID
• 4 months ago - submitted by Chris Hemme

Ontology to help the systematic review and meta-analysis process of non randomized clinical trials.

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• SciCrunch
• 13 years ago - by Anonymous

Software Matlab interface for reading and writing Neurodata Without Borders (NWB) 2.0 files.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Database provides age specific reference templates and segmented brain volumes for participants ranging from 2 weeks to 89 years of age. It is highly utilized for pediatric and lifespan neurostructural studies to prevent misspecifications caused by using adult only templates. Consists of average MRI templates, segmented partial volume estimate volumes for GM, WM, T2W-derived CSF. The database is separated into head-based and brain-based averages. The data are separated by ages in months, years, 6-month, or 5-year intervals. The templates are grouped into first year (2 weeks through 12 months), early childhood (15 months through 4 years), childhood (4 years through 10 years), adolescence (10.5 years through 17.5 years) and adults (18 years through 89 years). Tools for cortical source analysis of EEG and ERP are provided. These tools are based on the average MRI templates, segmenting, and atlases.

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• NIF
• 4 months ago - submitted by Albert Crowley