Curator Dashboard

Public research university system in the U.S. state of California with campuses at Berkeley, Davis, Irvine, Los Angeles, Merced, Riverside, San Diego, San Francisco, Santa Barbara, and Santa Cruz, along with numerous research centers and academic abroad centers.

• Organization
• SciCrunch
• 17 years ago - submitted by Anita Bandrowski

Software command-line tool designed for hard-filtering variant callsets (VCF files) by applying user-defined criteria to annotate, rather than remove, low-quality variants. It marks fails in the FILTER field (e.g., using JEXL expressions to filter by DP, QD, or FS), making it essential for filtering small datasets, non-model organisms, or whenever Variant Quality Score Recalibration (VQSR) is not feasible

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• RRID
• 6 months ago - by Anonymous

Radiation Oncology is a featured book on Wikibooks because it contains substantial content, it is well-formatted, and the Wikibooks community has decided to feature it. This wiki project is an open source, free access reference book. Anyone is welcome and encouraged to contribute anytime, anything (as long as it relates to Radiation Oncology). Feel free to edit it, update it, correct it, and otherwise increase its teaching potential. Full Table of Contents *Preface *Clinical Radiation Oncology *Treatment Toxicity and Supportive Care *Treatment Approaches *Cancer Biology *Appendices

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• SciCrunch
• 16 years ago - by Anonymous

Portal for scRNA-seq study. Includes dendrogram visualization and clustering of all cells in scRNA-seq study as well as interactive filtered views for cell type, gene and/or donor group.

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• RRID-Legacy
• 6 years ago - submitted by Anh Nguyet Vu

Core provides biological electron microscopy services including sample preparation, SEM and TEM imaging, array tomography, and cryo-EM plunge freezing.

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• SciCrunch
• 6 months ago - submitted by Edyta Vieth

Laboratory portal that houses the following databases. MethPrimer is a program for designing bisulfite-conversion-based Methylation PCR Primers. Currently, it can design primers for two types of bisulfite PCR: 1) Methylation-Specific PCR (MSP) and 2) Bisulfite-Sequencing PCR (BSP) or Bisulfite-Restriction PCR. CpG Island Prediction MethPrimer can also analyze input sequences for the existence of CpG islands. Human Prostate Gene Database (PGDB) is a curated and integrated database of human genes related to the prostate and prostatic diseases. Human Kidney Gene Database (KGDB) is a curated and integrated database of human genes related to the kidney and renal diseases. The Li Lab is interested in understanding how small RNA regulates gene expression at the transcriptional level by targeting gene promoter sequences, particularly how small RNA activates gene transcription, a phenomenon termed RNA activation (RNAa).

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• SciCrunch
• 13 years ago - by Anonymous

Incorporated as non-profit member based organization promoting scientfic collaboration in computational neuroscience.Advances computational neuroscience by pushing limits of large scale simulations of biologically realistic neuronal networks.

• Organization
• SciCrunch
• 6 years ago - submitted by Hans Ekkehard Plesser

First translational medical research institute dedicated to translating scientific discoveries into applications for medical practice. Australian-first initiative of bench to bedside medical research.

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• RRID
• 5 months ago - submitted by Edyta Vieth

Ontology that characterizes the state of current thought in cognitive science. It defines a set of mental concepts along with a set of mental tasks, and the measurement relations between those classes.

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• SciCrunch
• 13 years ago - by Anonymous

Open source web based visualization tool for exploring crosslinking mass spectrometry results. Displays residue resolution positional information including linkage sites and linked peptides, all types of crosslinking reaction product, ambiguous results and additional sequence information such as domains.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Molecular Education, Technology and Research Innovation Center (METRIC) is an NC State University-wide Shared Core Research Facility administered by the Office of Research and Innovation. We provide internal and external researchers with access to instrumentation and technical expertise across three primary analytical platforms: Mass Spectrometry: Supports qualitative and quantitative analyses, including high-resolution accurate mass (HRAM) measurements, proteomics, metabolomics, and small molecule analysis. Magnetic Resonance (NMR & EPR): Provides structural and dynamic characterization of molecules in solution. Capabilities include multi-nuclear solution-state NMR and Electron Paramagnetic Resonance (EPR) spectroscopy for studying paramagnetic species, transition metal complexes, and free radicals. X-Ray Diffraction: Offers atomic-level structural determination. The facility is equipped for single-crystal X-ray diffraction of both small molecules (including absolute configuration determination) and macromolecules/proteins.

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• SciCrunch
• 5 months ago - submitted by Edyta Vieth

Ontology for describing electrocardiograms, their capture method(s) and their waveforms.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package and ShinyApp for producing PRISMA 2020 compliant flow diagrams. ShinyApp for producing PRISMA 2020 compliant flow diagrams.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core facility which provides mass spectrometry analyses to Diabetes Research Center investigators that includes quantification as well as structural characterization of diabetes-related biomolecules.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Ontology to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software R package to find and filter artificial chimeric reads specifically generated in next generation sequencing process of formalin fixed paraffin embedded tissues. These artificial chimeric reads can lead to large number of false positive structural variant calls. Artifact chimeric read filter to improve SV detection in FFPE samples.

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• SciCrunch
• 6 years ago - submitted by Lanying Wei

Core is dedicated to advancing biomedical discovery through modern and highly advanced imaging technologies. Provides access to high-resolution, non- and minimally invasive imaging tools that enable visualization of biological processes in vivo. Core offers imaging services including MR Solutions Multi-Field MRI systems (3T, 7T, and 9.4T) for detailed anatomical and functional imaging, the IVIS Lumina S5 platform for sensitive bioluminescence and fluorescence imaging, and the TriTom Photoacoustic Imager for high-contrast 3D photoacoustic visualization and multi-spectral imaging of molecular and vascular dynamics.Facility supports a wide range of preclinical applications. These include longitudinal animal studies, drug development, biomarker discovery, and validation of novel imaging agents.

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• SciCrunch
• 4 months ago - submitted by Edyta Vieth

A system of classifications to enable systematic description of how injuries occur. It is designed especially to assist injury prevention. It was originally designed for use in settings in which information is recorded in a way that allows statistical reporting--for example, injury surveillance based on collection of information about cases attending a sample of hospital emergency departments. It has also been found useful for other purposes. For example, it has been used as a reference classification during revision of another classification, to record risk-factor exposure of children in a cohort study, as the basis for special-purpose classifications and in a growing number of other ways.

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• SciCrunch
• 13 years ago - by Anonymous

Portal devoted to suite of MORF reporter mice labels of Cre positive neurons and glia distributed stochastically throughout brain and can be imaged with endogenous fluorescence (mNeonGreen in MORF1 and EGFP in TIGRE-MORF) or stained for multivalent immunoreporter (Spaghetti Monster fluorescent protein V5, or smFP-V5, in MORF3). MORF technology used to label and reconstruct thousands genetically defined cells per brain for large scale, unbiased classification and quantitative analyses of CNS cell types brainwide.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Nanofabrication and characterization facility that provides open access to advanced cleanroom infrastructure, instrumentation, and technical expertise. Offers infrastructure for fabrication and characterization of nanoscale materials, systems and devices. Provides user training, process development assistance, and access to specialized expertise for research and prototyping.

• Resource
• RRID
• 4 months ago - submitted by Yousheng (Wilson) Lin