Curator Dashboard

Command-line utility provided by the UCSC Genome Browser to convert text-based bedGraph files into indexed binary bigWig files. It is specifically used in bioinformatics to transform dense, continuous genome coverage data into a format that enables fast visualization and remote viewing in genome browsers like IGV or the UCSC Genome Browser.

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• 2 months ago - by Anonymous

Software code and pipelines for the study of pan-cancer myeloid immunosenescence. Analytical framework integrates bulk RNA-seq (GTEx/TCGA) and multi-cohort single-cell RNA sequencing (scRNA-seq) data to construct high-resolution myeloid atlases, cellular communication networks, and clinical prognostic signatures.

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• 2 months ago - submitted by han Jiang

Core provides histology, immunohistochemistry, imaging, quantitative image analysis, and pathology consultation services. Offers experience, expertise and instrumentation across all platforms. Through the partnership with the Comparative Pathology Program (CPP), we have board certifies veterinary pathologists on staff who are available for research consultation and collaboration.

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• 2 months ago - submitted by Edyta Vieth

Specialized, automated, cyclotron-based system designed for the decentralized, high-volume production of medical radioisotopes, such as Gallium-68,Technetium-99m, and Zirconium-89. It allows hospitals and radiopharmacies to produce PET and SPECT imaging agents locally, bypassing supply chain disruptions and reducing dependence on traditional nuclreactors.

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• 2 months ago - by Anonymous

Compact, automated, dual-particle cyclotron system designed for fast, easy and efficient production of PET tracers. It offers the efficiency required to facilitate your clinical schedules, flexibility for research protocols and the performance necessary to meet regional distribution demands. The PETtrace 800 is built around a compact negative ion cyclotron with a vertical mid-plane of proven design, featuring both protons and deuterons allowing maximum flexibility and low-cost isotope production.

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• 2 months ago - by Anonymous

Core provides researchers with confocal imaging equipment to enable acquisition of high resolution images (both in vivo and in vitro). Offers training and assistance in the use of confocal microscopes. Optimization of data acquisition and image processing are both part of the training, thus enabling researchers to efficiently design studies, acquire image data and extract relevant data features.

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• 2 months ago - submitted by Shilpa Dilip Kumar

Core enables and promotes responsible research practices to generate trustworthy data, and to safeguard research data. The service is comprised of 4 pillars; governance, good research practice support, stewardship and knowledge exchange.

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• 2 months ago - by Anonymous

Facility provides a range of histology and tissue-based molecular services to research scientists within the UCL Cancer Institute and across UCL.The facility also maintains a range of equipment available for use by UCL researchers to support a range of projects involving human and animal samples. We work in close collaboration with the UCL / UCLH Biobank for Studying Health and Disease and the UCL/UCLH Cancer Biomarker Centre (CBC) which provides a framework for the governance of research involving human samples and supports researchers in meeting regulatory standards.

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• 2 months ago - by Anonymous

Immune Monitoring and Discovery Platform (IMDP) at the Pelotonia Institute for Immuno-Oncology (PIIO) provides cutting-edge technologies and expertise to accelerate discoveries in cancer immunology and immunotherapy. Our mission is to empower researchers with advanced tools for immune profiling, spatial biology, and translational studies, enabling innovation that drives new therapies for patients.

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• 2 months ago - submitted by Edyta Vieth

Software open-source Python/Flask framework for building online behavioral experiments and surveys. You describe your study in plain-text files: a TOML config for settings and page flow, JSON files for questionnaires, and HTML files for custom pages. BOFS handles participant routing, condition assignment, consent forms, data storage, and provides an admin panel for monitoring and export.

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• 2 months ago - submitted by Colby Johanson

Software Jupyter notebook based genomic data visualization toolkit.

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• 2 months ago - by Anonymous

Software Python package tool that facilitates the identification of total cis-NATs (cis-natural antisense transcripts) from gene datasets.

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• 2 months ago - by Anonymous

Software tool as context-based long-read simulator that models sequence-context-dependent errors from empirical sequencing data, coupled with a Bayesian optimization framework for systematic parameter tuning.

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• 3 months ago - submitted by Jiang Hu

Web open decentralized science platform for peptide sequence analysis and community annotation. Researchers submit amino acid sequences for AI-powered bioactivity scoring, structure prediction, and toxicity assessment. Results are publicly annotated by the community and secured on the Solana blockchain for verifiable, censorship-resistant research records.

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• 3 months ago - submitted by marco sebastian

Thermogravimetric analyzer used to measure a material’s weight change (decomposition, oxidation, or dehydration) as it is heated, cooled, or held at a constant temperature. It is used in research and quality control to analyze polymers, pharmaceuticals, and composites for stability and composition.

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• 3 months ago - by Anonymous

Core Facility for the development and manufacturing of experimental medical devices. Offers advise on experimental design, draft technical proposals, and support in the realization of prototypes and patent ideas.

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• 3 months ago - submitted by Jan-Erik Ode

Software Python package for network analysis and Leiden community detection/clustering algorithm commonly used in single cell analysis for biology.

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• 3 months ago - by Anonymous

Software R package for annotating gene lists and converting between identifiers.

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• 3 months ago - by Anonymous

Software R package provides some legacy utility functions for performing single-cell analyses. Most of these functions are deprecated in favor of newer, more performant alternatives. We just keep this package around for back-compatibility and to point to the replacement functions.

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• 3 months ago - by Anonymous

Software R package for access to processed 10x (droplet) and SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data from the Tabula Muris consortium.

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• 3 months ago - by Anonymous