Curator Dashboard

Open source device for fluid tracking in socially housed rats. Device uses RFID and custom hardware to individually measure and record each rat's fluid consumption and licking microstructure.

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• 2 years ago - submitted by Kevin Chavez Lopez

Core services include paraffin embedding and histology, epifluorescence microscopy and confocal LSM, SEM and TEM sample prep and imaging.

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• 2 years ago - submitted by Edyta Vieth

Software suite of tools, algorithms, and visualizations focusing on relationships between cell clades. This includes new ways of clustering, plotting, choosing differential expression comparisons. Identifies and visualizes relationships of single-cell clades.

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• 2 years ago - submitted by Javier Ruiz

Software Python implementation of clustering tool named TooManyCells. Software package for spectral clustering.

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• 2 years ago - submitted by Javier Ruiz

web application as calculator designed for doctors and other health care providers to use with their patients. Estimates the risk of colorectal over the next five years and the lifetime risk for men and women who are Between the ages of 45 and 85, White,Black/African American, Asian American/Pacific Islander,Hispanic/Latino.

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• 2 years ago - by Anonymous

Software desktop application as general purpose diagramming program with multi-document interface. Cross-platform Java application to generate high-quality diagrams. Runs on Windows, Linux, Mac OS, and other platforms that support Java Virtual Machine.

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• 2 years ago - by Anonymous

Continuous 3D reference atlas for postnatal mouse brain.

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• 2 years ago - by Anonymous

Web application for mutagenic primer design for QuikChange mutagenesis experiments. Used to calculate/design appropriate primer sequences with optimal melting temperature.

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• 2 years ago - by Anonymous

Software tool for gene embedding augmented by Graph Neural Network and single-cell omics data. Performs prediction and module detection simultaneously, and enhances high-dimensional information of gene embedding. Helps identify gene modules in specific tissue contexts, providing new ideas for studying gene regulatory functions in tissues and helps elucidate influence of regulatory genes on biological processes in specific tissue environment and infer more disease-related genes to explain disease risk.

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• 2 years ago - submitted by Shiqi Lin

Software analysis tool that enables data analysis of multiplex experiments and advanced applications and assay strategies for Droplet Digital PCR (ddPCR). For use with data files generated on QX100 or QX200 Droplet Reader using QuantSoft Standard Edition Software versions 1.4 or later.

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• 2 years ago - by Anonymous

Software tool as peak-caller for genomic enrichment assays. Analyzes alignment files generated following assay and produces file detailing peaks of significant enrichment.

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• 2 years ago - by Anonymous

Software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. Used for long reads, but works also well with short reads.

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• 2 years ago - by Anonymous

Software variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). Enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Takes as input aligned BAM/CRAM file and outputs phased VCF file with variants and haplotype information.

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• 2 years ago - by Anonymous

Software package for Hi-C/HiChIP interaction calling and differential analysis using efficient implementation of HiC-DC statistical framework. Enables principled statistical analysis of Hi-C and HiChIP data sets. Enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP

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• 2 years ago - by Anonymous

Software tool for predicting TS and risk from glioblastoma whole slide images. Used to predict risk scores and transcriptional subtypes from whole slide images of glioblastomas.

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• 2 years ago - submitted by Thomas Roetzer-Pejrimovsky

Web browser-based JavaScript application for visualizing hierarchical cellular populations as interactive radial tree. Allows users to explore, filter, and manipulate hierarchical data structures through intuitive interface while also enabling batch export of high-quality custom graphics.

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• 2 years ago - submitted by Conor Klamann

Core provides Sanger sequencing and fragment analysis via capillary electrophoresis. Expected turnaround time is within 2 business days of order receipt.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Algorithm for generating unique study identifiers in distributed and validatable fashion, in multicenter research. Light-weight, block chain style resource identifier generation for tracking resource linkage, provenance, utilization, and visualization. NHash has unique set of properties: (1) it is a pseudonym serving the purpose of linking research data about study participant for research purposes; (2) it can be generated automatically in completely distributed fashion with virtually no risk for identifier collision; (3) it incorporates set of cryptographic hash functions based on N-grams, with combination of additional encryption techniques such as shift cipher; (d) it is validatable (error tolerant) in the sense that inadvertent edit errors will mostly result in invalid identifiers.

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• 2 years ago - submitted by Guo-Qiang Zhang

Standalone program and library to plot beautiful genome browser tracks. Software Python plotting tool that combines multiple tracks. Enables reproducible and standardized generation of highly customizable and publication ready images.

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• 2 years ago - by Anonymous

Software graphical tool to allow easy editing of (XML) model, create initial positions of cells, run simulation, and visualize results. To contribute, fork and make PRs to the development branch. Used to create, execute, and visualize multicellular model using PhysiCell.

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• 2 years ago - by Anonymous