Curator Dashboard

Software library and tool for accessing remote BLOW5 files. Used for fetching reads from remote BLOW5 files.

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• 2 years ago - submitted by Bonson Wong

Software R package models, plans, and schedules flexible, such as agile, extreme, and hybrid project plans. The package contains project planning, scheduling, and risk assessment functions.

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• 2 years ago - submitted by Kosztyán Zsolt Tibor

System used for small animal brain surgery. Allows to create neurotrauma model with unprecedented degree of reproducibility of the direction of impact and position of the injury. Controlled impact injury device. Device used for traumatic brain injury induction.

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• 2 years ago - submitted by Edyta Vieth

Core specializes in electrical design, fabrication, and repair of research equipment and instrumentation.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Unites all Delft University of Technology research in the field of robotics. Its main challenge is to get robots and humans to work together effectively in unstructured environments, and real settings. Institute takes a leading role in the creation of the next generation robots.

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• 2 years ago - submitted by Edyta Vieth

Image capture brightfield whole slide scanner for low throughput with five slide capacity and 20X and 40x magnification capabilities. 2x3 slide option available for large slides. Aperio CS2 runs on Microsoft Windows 10 operating system.

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• SciCrunch
• 2 years ago - submitted by Martha Campbell-Thompson

Core offers single cell sequencing. Provides analysis of transcriptomics, proteomics and epigenomics at single cell level. Provides comprehensive approach for cell characterization and gene expression profiling. Services include single cell gene expression, immune profiling, ATAC, and multiome analysis.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core Facility with conventional, full-spectrum, cell sorting and flow cytometry services. Training provided by core personnel.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Database containing detailed information about small molecules produced by human microbiome. Provides metabolite data including structure, names, descriptions, chemical taxonomy, chemical ontology, physico-chemical data, spectra and contains detailed information about microbes that produce these chemicals, enzymatic reactions responsible for their production, bioactivity of chemicals and anatomical location of these chemicals and microbes. Many data fields in the database are hyperlinked to other databases including FooDB, HMDB, KEGG, PubChem, MetaCyc, ChEBI, UniProt, and GenBank. Database is FAIR compliant.The data in MiMeDB are released under the Creative Commons (CC) 4.0 License.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Open access knowledge base for microbial natural products discovery. Database of microbially derived natural product structures. Provides coverage of bacterial and fungal natural products to visualize chemical diversity. Includes compounds and contains referenced data for structure, compound names, source organisms, isolation references, total syntheses, and instances of structural reassignment. Interactive web portal permits searching by structure, substructure, and physical properties. Provides mechanisms for visualizing natural products chemical space and dashboards for displaying author and discovery timeline data. Atlas has been developed under FAIR principles.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Software application for universal searching of Mass Spectrometry data. Open source MS query language for flexible and mass spectrometer manufacturer-independent mining of MS data. Implements common MS terminology to build consensus vocabulary to search for MS patterns in single mass spectrometry run. Enables set of mass spectrometry patterns to be queried directly from raw data.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Software framework to find and re-analyze public Mass Spectrometry data. Used to find uniformly formatted public MS/MS data in the Global Natural Product Social Molecular Networking Platform (GNPS) via formatted metadata. New or previously collected data can be added provided they adhere to the ReDU metadata standards (the implemented drag-and-drop validator is applicable to any scientific data) and data are available in GNPS/MassIVE.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Software tool to detect single nucleotide variants by comparing data from next-generation sequencing experiments. Variant caller to detect single nucleotide variant positions from comparing RNA-DNA and/or RNA-RNA sequencing samples. JACUSA2 is one-stop solution to detect single nucleotide variants and reverse transcriptase induced arrest events in Next-generation sequencing data.

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• 2 years ago - by Anonymous

Web application that is embedded in GNPS, which is community service. Web enabled mass spectrometry search engine for searches of all small molecule Mass Spectrometry data. Used to search single MS/MS spectrum against public GNPS spectral libraries and all public MS/MS datasets.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Core provides flow cytometry and cell sorting services. Staff offers help with instrument setup, data analysis, and consultation for experiment design. Training is available to run analytical cytometers.Houses FACSAria cell sorters, Cytek Aurora Cell Sorter, LSR Fortessas , LSR IIs, ImageStreamx Mark II and 4 full spectral cytometers., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• 2 years ago - by Anonymous

Software suite of open source Python modules, data sets, and tutorials supporting research and development in Natural Language Processing. Platform for building Python programs to work with human language data. Provides interfaces to corpora and lexical resources such as WordNet, along with suite of text processing libraries for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for industrial strength NLP libraries, and active discussion forum.

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• 2 years ago - by Anonymous

Software application as fast, extensible progress bar for Python and CLI.

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• 2 years ago - by Anonymous

Software Python library for unsupervised topic modeling, document indexing, retrieval by similarity, and other natural language processing functionalities, using modern statistical machine learning.

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• 2 years ago - by Anonymous

Software R package for calculation of standard and bootstrap confidence intervals.

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• 2 years ago - by Anonymous

Automated slide preparation system to run manual and fully automated experiments simultaneously with no synchronization errors. Ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH. Automated baking, deparaffinization, cell conditioning and staining including immunohistochemistry (IHC) and in situ hybridization (ISH) Enhanced multiplexing and immunofluorescence, 30 slide reaction chambers allow for independent protocols for each individual slide. Ready-to-use optimized reagents.

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• 2 years ago - by Anonymous