Curator Dashboard

Software analysis tool that enables data analysis of multiplex experiments and advanced applications and assay strategies for Droplet Digital PCR (ddPCR). For use with data files generated on QX100 or QX200 Droplet Reader using QuantSoft Standard Edition Software versions 1.4 or later.

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• 2 years ago - by Anonymous

Software tool as peak-caller for genomic enrichment assays. Analyzes alignment files generated following assay and produces file detailing peaks of significant enrichment.

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• 2 years ago - by Anonymous

Software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. Used for long reads, but works also well with short reads.

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• 2 years ago - by Anonymous

Software variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). Enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Takes as input aligned BAM/CRAM file and outputs phased VCF file with variants and haplotype information.

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• 2 years ago - by Anonymous

Software package for Hi-C/HiChIP interaction calling and differential analysis using efficient implementation of HiC-DC statistical framework. Enables principled statistical analysis of Hi-C and HiChIP data sets. Enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP

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• 2 years ago - by Anonymous

Software tool for predicting TS and risk from glioblastoma whole slide images. Used to predict risk scores and transcriptional subtypes from whole slide images of glioblastomas.

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• 2 years ago - submitted by Thomas Roetzer-Pejrimovsky

Web browser-based JavaScript application for visualizing hierarchical cellular populations as interactive radial tree. Allows users to explore, filter, and manipulate hierarchical data structures through intuitive interface while also enabling batch export of high-quality custom graphics.

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• 2 years ago - submitted by Conor Klamann

Core provides Sanger sequencing and fragment analysis via capillary electrophoresis. Expected turnaround time is within 2 business days of order receipt.

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• 2 years ago - submitted by Edyta Vieth

Algorithm for generating unique study identifiers in distributed and validatable fashion, in multicenter research. Light-weight, block chain style resource identifier generation for tracking resource linkage, provenance, utilization, and visualization. NHash has unique set of properties: (1) it is a pseudonym serving the purpose of linking research data about study participant for research purposes; (2) it can be generated automatically in completely distributed fashion with virtually no risk for identifier collision; (3) it incorporates set of cryptographic hash functions based on N-grams, with combination of additional encryption techniques such as shift cipher; (d) it is validatable (error tolerant) in the sense that inadvertent edit errors will mostly result in invalid identifiers.

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• 2 years ago - submitted by Guo-Qiang Zhang

Standalone program and library to plot beautiful genome browser tracks. Software Python plotting tool that combines multiple tracks. Enables reproducible and standardized generation of highly customizable and publication ready images.

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• 2 years ago - by Anonymous

Software graphical tool to allow easy editing of (XML) model, create initial positions of cells, run simulation, and visualize results. To contribute, fork and make PRs to the development branch. Used to create, execute, and visualize multicellular model using PhysiCell.

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• 2 years ago - by Anonymous

IBT Flow Cytometry and Cell Sorting Facility provides flow cytometry and cell sorting services, along with scientific expertise. Provides academic and commercial users with access to High Throughput Flow Cytometry automated platform in Texas Medical Center.

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• 2 years ago - submitted by Edyta Vieth

Research Informatics Core at University of Illinois-Chicago provides bioinformatics services including genomics, transcriptomics, epigenomics, metagenomics, metabolomics, and proteomics analysis, as well as applications in statistical analysis, systems biology, and machine learning.

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• 2 years ago - submitted by Edyta Vieth

Multi-purpose core research facility with sub-cores. Genetics, Analytical, Autoclave and Cell Culture Cores. Genetics Core provides Next Generation Sequencing, DNA/RNA and protein quantitation, nucleic acid QC, Real-Time PCR, and Droplet Digital PCR. Analytical Core houses analytical instruments such as UV-Vis, nanoparticle analyzers and plate readers. Some basic molecular biology equipment are also available. Cell Culture Core for researchers who need access to BSL1/BSL2 cell culture facility. Also includes autoclaves or labware sterilization and biohazardous waste disposal.

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• 2 years ago - submitted by Edyta Vieth

Research core laboratory within Center for Computational and Integrative Biology at Massachusetts General Hospital in Boston. Provides access to instrumentation, methodologies and expertise Services include Sanger DNA sequencing,Next Generation Sequencing, Long read Sequencing, genotyping, laboratory automation, molecular biology.

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• 2 years ago - submitted by Edyta Vieth

Software Python library that aims to complement existing network analysis libraries such as networkx, igraph, and graph-tool with publication-quality visualisations within the Python ecosystem. Publication-quality Network Visualisations in Python.

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• 2 years ago - by Anonymous

Software Python library for Gene Ontology analysis. Performs gene ontology enrichment analyses to determine over- and under-represented terms.

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• 2 years ago - by Anonymous

Software Python package for DIA with automated isolation design. Used for Data-Independent Acquisition providing Automated Isolation Design. Optimally generates dia-PASEF and synchro-PASEF methods and places them optimally within the m/z – ion mobility (IM) plane.

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• 2 years ago - by Anonymous

Compact stereotaxic instrument designed for use with knock-out and transgenic mice. Instrument includes 100 micron, 3-axes left-hand manipulator arm, mouse snout clamp and tooth bar, dual-sided ear bars, and corner clamp probe holder. Stoelting’s Motorized Stereotaxic Manipulator Arms are designed for fast, accurate positioning during stereotaxic surgery. Motorized manipulator arms employ touchscreen display for easy-to-control movement of each axis. Manual movement is available anytime. Optional Drill feature available.

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• 2 years ago - by Anonymous

Bruker BioSpec preclinical MRI equipment at translational field of 3 Tesla, extends the range of multi-purpose, preclinical MRI and MRS systems in compact, easy to site footprint.

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• 2 years ago - by Anonymous