Curator Dashboard

Software tool as long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap2 computes each read mapping through collection of confident subalignments. This approach is more tolerant of structural variation and more sensitive to paralog-specific variants within repeats.

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• SciCrunch
• 2 years ago - by Anonymous

Software R package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree. Helps users choose parameters to reflect age information for prior age distributions, visualise time priors, and produce output files ready to be used in MCMCtree. Used to prepare MCMCtree analyses and visualize posterior ages on trees.

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• SciCrunch
• 2 years ago - by Anonymous

Web analysis tool for validating predictive biomarkers of chemotherapy/hormonal therapy/anti-HER2 therapy using transcriptomic data of breast cancer patients. Designed to validate and rank new predictive biomarker candidates in real time. Platform provides resource for researchers to mine database and to validate and rank future biomarker candidates.

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• 2 years ago - submitted by Susan Kasper

Software tool for discovery of novel immune systems in prokaryotes. Automatic annotation and classification of immune systems in prokaryotes using Deep Learning.

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• 2 years ago - submitted by Sven Hauns

Web tool for determining HLA locus and allele disequilibria by population ethnicity.

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• 2 years ago - submitted by Steven Heron

Software for processing single-molecule and diffraction limited polarisation camera images.

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• RRID
• 2 years ago - by Anonymous

Software for live processing of polarisation camera images.

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• RRID
• 2 years ago - by Anonymous

Software napari plugin to process and render polarisation camera data. Used for polarisation camera image processing.

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• RRID
• 2 years ago - by Anonymous

Software for processing single-molecule and diffraction limited polarisation camera image data using dipole PSF fitting. MATLAB scripts and utilities for analysis of simulated and experimental POLCAM single-molecule orientation-localisation microscopy (SMOLM) data using RoSE-O, providing accurate and precise measurements of location and orientation of single molecules.

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• RRID
• 2 years ago - by Anonymous

Software for performing pixelwise calibration of sCMOS cameras. MATLAB code and instructions for routine camera calibration.

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• 2 years ago - by Anonymous

Optima XE generates centrifugal forces for separation of particles. Classified S, it can be used with all currently manufactured Beckman Coulter preparative rotors. Uses diffusion pump in series with mechanical vacuum pump to reduce chamber pressure to very low level. Uses solid state thermoelectric refrigeration and heating system without coolant or water. Cooling is provided by forced air from the fans.

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• 2 years ago - by Anonymous

Open source device for fluid tracking in socially housed rats. Device uses RFID and custom hardware to individually measure and record each rat's fluid consumption and licking microstructure.

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• 2 years ago - submitted by Kevin Chavez Lopez

Core services include paraffin embedding and histology, epifluorescence microscopy and confocal LSM, SEM and TEM sample prep and imaging.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Software suite of tools, algorithms, and visualizations focusing on relationships between cell clades. This includes new ways of clustering, plotting, choosing differential expression comparisons. Identifies and visualizes relationships of single-cell clades.

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• 2 years ago - submitted by Javier Ruiz

Software Python implementation of clustering tool named TooManyCells. Software package for spectral clustering.

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• 2 years ago - submitted by Javier Ruiz

web application as calculator designed for doctors and other health care providers to use with their patients. Estimates the risk of colorectal over the next five years and the lifetime risk for men and women who are Between the ages of 45 and 85, White,Black/African American, Asian American/Pacific Islander,Hispanic/Latino.

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• RRID
• 2 years ago - by Anonymous

Software desktop application as general purpose diagramming program with multi-document interface. Cross-platform Java application to generate high-quality diagrams. Runs on Windows, Linux, Mac OS, and other platforms that support Java Virtual Machine.

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• RRID
• 2 years ago - by Anonymous

Continuous 3D reference atlas for postnatal mouse brain.

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• RRID
• 2 years ago - by Anonymous

Web application for mutagenic primer design for QuikChange mutagenesis experiments. Used to calculate/design appropriate primer sequences with optimal melting temperature.

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• 2 years ago - by Anonymous

Software tool for gene embedding augmented by Graph Neural Network and single-cell omics data. Performs prediction and module detection simultaneously, and enhances high-dimensional information of gene embedding. Helps identify gene modules in specific tissue contexts, providing new ideas for studying gene regulatory functions in tissues and helps elucidate influence of regulatory genes on biological processes in specific tissue environment and infer more disease-related genes to explain disease risk.

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• RRID
• 2 years ago - submitted by Shiqi Lin