Curator Dashboard

Software application as helper to run command, capture stdout/stderr and details about running.

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• RRID
• 2 years ago - by Anonymous

Software toolkit to identify and visualize cancer neoantigens. Cancer immunotherapy tools suite consisting of following tools: pVACseq as cancer immunotherapy pipeline for identifying and prioritizing neoantigens from VCF file; pVACbind as cancer immunotherapy pipeline for identifying and prioritizing neoantigens from FASTA file; pVACfuse as tool for detecting neoantigens resulting from gene fusions; pVACvector as tool designed to aid specifically in construction of DNA-based cancer vaccines; pVACview as application based on R Shiny that assists users in reviewing, exploring and prioritizing neoantigens from results of pVACtools processes for personalized cancer vaccine design.

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• 2 years ago - by Anonymous

Web server predicts peptide binding to any MHC II molecule of known sequence using Artificial Neural Networks.

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• 2 years ago - by Anonymous

Core provides secure receipt, processing, archiving and analysis of biological samples. Offers support for clinical research from sample collection to genetic analysis, working to the principles of Good Clinical Practice for Laboratories. Facility provides access to genomic technologies and services including next-generation sequencing (Illumina), third-generation sequencing (PacBio and Oxford Nanopore), bespoke bioinformatics analysis, and genomics and bioinformatics training.

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• 2 years ago - by Anonymous

Provides tools and expertise in bio image analysis, histology, and microscopy. Facility allows for the preparation, visualization, and quantification of biological samples at the cellular and sub cellular levels. Researchers can choose to utilize our instruments independently or collaborate with our skilled staff through our fee-for-service options.

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• 2 years ago - submitted by Nicholas Anthony

Design of SAKR-M device includes computer, pneutronic unit, spirometric sensor, finger cuff, ECG electrodes and power supply adapter. Used for functional diagnostics of nervous regulation of blood circulation. Integrated method of studying cardiorespiratory system to analyze heart rate variability , arterial blood pressure variability and respiratory patterns.

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• 2 years ago - submitted by Oleksandr Romanchuk

Aquatic Platform consists of semi-automated installation that provides zebrafish housing, husbandry, and experimental services to support biomedical research and teaching activities. Facility can house adult zebrafish, offering robotic feeding, maintenance of constant micro-environmental parameters, and semi-automated cleaning systems that ensure excellent conditions for research quality and animal welfare.

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• 2 years ago - submitted by Maria Lorena Cordero Maldonado

Core provides comprehensive flow cytometry analysis and cell sorting including instrumentation, technical support, training and consultation.

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• 2 years ago - by Anonymous

Software application as model of magnetic field distribution of magnetic coil visualized using COMSOL Multiphysics.

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• 2 years ago - submitted by Peng Wang

Software tool for detecting and quantifying punctate co-localization in multi-channel images.

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• 2 years ago - by Anonymous

Software R package to create plots of meta-analytic data. Used to create forest plots, funnel plots, and their variants, such as rainforest plots, thick forest plots, additional evidence contour funnel plots, and sunset funnel plots. In addition, functionalities for visual inference with funnel plot in context of meta-analysis are provided.

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• 2 years ago - by Anonymous

Software R package for model selection and multimodel inference. Used for automated model selection and model-averaging. Provides wrapper for glm and other functions, automatically generating all possible models with specified response and explanatory variables.

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• 2 years ago - by Anonymous

Software framework for analyzing ST data by incorporating graph attention autoencoder and multi-scale deep subspace clustering.Used for Unveiling Patterns in Spatial Transcriptomic Data.

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• 2 years ago - submitted by Xinhuai Peng

Hot Bonnet heated lid fitted into PTC 200 Thermo Cycler controls pressure and height.Various plastic wares can be accommodated by system. Enables oil-free cycling.Equipped with interchangeable sample blocks and heat pump. Single control units of this model can also be supplied with different alpha modules and alpha blocks to increase functionality.

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• 2 years ago - submitted by Thomas Emmanuel

Lyser simultaneously disrupts multiple biological samples through high-speed shaking in tubes or 96-well plates with stainless steel, zirconium, ceramic or glass beads. Using the appropriate adapter set, up to 192 samples can be processed at the same time. Alternatively, grinding jar set can be used to process large samples. Touchscreen and rotary knob make it easier to run and customize disruption protocols. Has pre-programmed protocols and customizable protocols for maximum sample versatility. Allows to create custom program cycles to set disruption parameters.TissueLyser II accessories, including adapter sets, are compatible with the TissueLyser III.

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• 2 years ago - submitted by Thomas Emmanuel

Web app for creating, exploring, labeling and sharing volcano plots . The plot can be annotated to show genes/proteins based on their top ranking or based on user input.

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• 2 years ago - by Anonymous

C++ program to infer biological relatedness from low coverage 2nd generation sequencing data. It uses information from genotype likelihoods rather than observed genotypes in maximum likelihood framework in order to estimate the overall coefficient of relatedness as well as individual kinship components between two samples. Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data.

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• 2 years ago - by Anonymous

Custom SolidWorks parts used in implementing hindlimb stabilization apparatus. Open source 3D-Printed Hindlimb Stabilization apparatus for measurement of stimulation evoked ankle flexion in rat.Apparatus is made up of 3 key components: Foot Pedal, Knee-Locking component, and Acrylic Base Platform. The design is adjustable for variations in anatomy across sex and size of rodents, and is low in cost. Components are almost entirely 3D-printed, and any other supplies are published along with the build instructions.

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• 2 years ago - submitted by Jensen Palmer

Software tools for generating single-cell gene expression data. Software pipeline for high-resolution and large field-of-view spatial transcriptomic data of Stereo-seq. Provides comprehensive and systematic platform for generating high-confidence single-cell spatial gene expression profiles, which specifically includes image stitching, image registration, tissue segmentation, nuclei segmentation and molecule labeling.

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• 2 years ago - submitted by Tongxuan Lv

Software for designing and running advanced behavioral experiments and neuroscientific studies.

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• 2 years ago - by Anonymous