Curator Dashboard

Secure One-health online platform that enables near real-time sharing under controlled access of pathogen sequencing data and their associated clinical/epidemiological metadata. Data exchange platform for bacterial, viral and fungal genomics and associated metadata.

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• 2 years ago - submitted by Aitana Neves

PhysiCell add-on which allows users to simulate ECM components as agents. PhysiCell addon for extracellular matrix modelling.

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• 2 years ago - submitted by Vincent Noël

Software package provides implementation of inference pipeline of AlphaFold v2. Incorporates physical and biological knowledge about protein structure, leveraging multi-sequence alignments, into design of deep learning algorithm. Used for protein structure prediction.

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• 2 years ago - by Anonymous

Software application offers accelerated prediction of protein structures and complexes by combining homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. Used for protein folding.

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• 2 years ago - by Anonymous

Global resource for cancer epidemiology. Presents national estimates of incidence, mortality and rate. Enables comprehensive assessment of cancer burden worldwide in 2022, based on GLOBOCAN estimates of incidence, mortality and prevalence for year 2022 in 185 countries or territories for 36 cancer types by sex and age group. Provides data visualization tools for exploring global cancer burden in 2022.

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• 2 years ago - by Anonymous

Interactive web-based platform presenting global cancer statistics to inform cancer control and cancer research. Focuses on the visualization of cancer indicators using data from IARC’s Cancer Surveillance Branch (CSU), including GLOBOCAN;Cancer Incidence in Five Continents (CI5); International Incidence of Childhood Cancer (IICC); and several cancer survival benchmarking projects (SurvCan and SURVMARK).

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• 2 years ago - by Anonymous

Core supports the application of cryo-EM in making new scientific discoveries. Provides access and training in the use of cutting edge cryo-EM technology and techniques for the characterization of biological samples from the cellular to the atomic scale.

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• 2 years ago - by Anonymous

Provides services including High-resolution imaging of bacteria and parasites, and their interactions with host eukaryotic cells; High-resolution imaging of biological processes of larger eukaryotic cells, spheroids, tissues and organs including the use of micro-fluidic devices. Provides equipment for biological specimen preparation for optical and electron microscopy. Provides training and support on the use of both basic and advanced microscopes including:transmitted light, wide-field fluorescence, confocal laser-scanning, super-resolution, high-content imaging, slide-scanning microscopy and range of image analysis and 3D-image visualisation software like FIJI, Huygens, Leica AIVIA, ZEISS ZEN Intellesis and Bitplane Imaris.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Software tool to calculate p-distance matrix based Variant Call Format.

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• SciCrunch
• 2 years ago - by Anonymous

Software wrapper command for command neighbor of the PHYLIP package. Implements Neighbor-Joining method of Saitou and Nei and UPGMA method of clustering. Constructs tree by successive clustering of lineages, setting branch lengths as the lineages join.

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• SciCrunch
• 2 years ago - by Anonymous

Software package for parentage analysis in plant and animal populations. It combines robust likelihood-based method with simple graphical interface.

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• SciCrunch
• 2 years ago - by Anonymous

Software R package to assign offspring to their parents without any prior information other than offspring and parental genotypes, and user-defined, acceptable error rate among assigned offspring. Auto-adaptive parentage inference software that tolerates missing parents.

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• SciCrunch
• 2 years ago - by Anonymous

Software R library for parentage assignment using Bi-Allelic Genetic Markers. Used for assignment of parentage with molecular markers. Improved paternity assignment among close relatives using simple exclusion method for bi-allelic markers.

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• SciCrunch
• 2 years ago - by Anonymous

Develops and supports KeyMolnet integrated platform for bioinformation, and provides analysis services using KeyMolnet. KeyMolnet provides support for disease mechanism analysis, drug discovery target discovery, expression data analysis obtained by microarrays and high-speed sequencers, and data analysis such as proteomics and metabolomics, based on molecular network information, disease information, and drug information collected by our researchers from the latest papers.

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• 2 years ago - by Anonymous

Laboratory scale ultrasonic processor for nanoparticle dispersion, emulsification, cell lysis, homogenization, particle size reduction, and wide range of other applications.

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• 2 years ago - by Anonymous

Web tool facilitating the conduct and assuring for the documentation of systematic reviews, systematic maps and further literature reviews.

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• 2 years ago - by Anonymous

Reporting guideline published in 2015 and aiming to facilitate the development and reporting of systematic review protocols.

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• 2 years ago - by Anonymous

Software platform to annotate cell types.

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• 2 years ago - submitted by Anita Bandrowski

Software tool extension to ImageJ for spinal cord. Used for efficient preparation and imaging of whole spinal cord and the absence of 3D reference atlas.

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• 2 years ago - submitted by Anita Bandrowski

Software application as helper to run command, capture stdout/stderr and details about running.

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• 2 years ago - by Anonymous