Curator Dashboard

Diagnostic sleep system developed by Phillips Respironics. Base station can be paired with LDxS head box for 19 EEG inputs or LDxN for 32 EEG inputs.

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• RRID
• 2 years ago - submitted by Tengyu Chen

Software tools for single-cell data processing.

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• SciCrunch
• 2 years ago - by Anonymous

Software allele-specific pipeline for unbiased read mapping and molecular QTL discovery. Allele-specific software for robust molecular quantitative trait locus discovery.

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• SciCrunch
• 2 years ago - by Anonymous

Browser based platform for selecting, exchanging, and visualizing metabolomics data with controlled data access. Used to facilitate collaborative metabolomics research and to enable researchers to make their experimental data findable, accessible, interoperable, and re-usable as defined by the FAIR principles.

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• RRID
• 2 years ago - submitted by Tim Tucholski

Source code and example data for running consensus Non-negative Matrix Factorization on single-cell RNA-Seq data.

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• RRID
• 2 years ago - by Anonymous

Flow Cytometry acquisition software.

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• RRID
• 2 years ago - by Anonymous

Neural networks for RoB assessment in preclinical publications. BERT-model based automated tool that assesses bias of preclinical research studies.

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• 2 years ago - submitted by Anita Bandrowski

Imaging Core provides equipment and services available to all UM researchers. Offers training and assistance in range of light microscope techniques including spinning disk confocal, super resolution imaging, lightsheet imaging of cleared organ and stereology systems. Offers image analysis software (Imaris neuroscience package) including 3D image rendering, surface creation, spot detection and filament tracing.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core provides full-service mouse genetic engineering support to researchers.Helps to select model for your research program, design and build any requisite constructs and reagents, and produce live mice. The most popular requests are for CRISPR-based gene edited mice and transgenic mice. Services include creation of engineered alleles for knockouts, conditional knockouts, SNP knockins, tag and marker insertions, deletions of up to 300kb, duplications, and transgenic alleles. These novel mouse models have been made on a wide spectrum of genetic background strains, including but not limited to C57BL/6J, C57BL/6N, NOD, BALB/cJ, FVB/Crl, NSGS, various 129 substrains, collaborative cross strains, and on mice that are already genetically modified. Breeding and genotyping program supports breeding to establish germline transmission and can also create cohorts for investigators. Provides strain cryopreservation, rederivation and rescue services, as well as cryostorage.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Provides technology and service capabilities in long and short read sequencing, spatial transcriptomics, and single cell assays.

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• RRID
• 2 years ago - by Anonymous

Provides technology and service capabilities in super resolution microscopy, image analysis, immunohistochemistry, and histopathology services. Provides consultations and technical support on histopathology services and experimental design.

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• RRID
• 2 years ago - by Anonymous

Clinical oncology database sourced from hospital registry data collected in Commission on Cancer-accredited facilities. These data are used to analyze and track patients with malignant neoplastic diseases, their treatments, and outcomes.

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• RRID
• 2 years ago - by Anonymous

Software workflow begins by preprocessing short-read samples of raw data to create counting colored De Bruijn graph. Graph based method for population genotyping of small and structural variants. Population genotyping workflow.

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• 2 years ago - submitted by Moustafa Shokrof

Software package built for in-depth analyses of tRNA-derived small RNAs (tDRs), mature tRNAs, and inference of RNA modifications from high-throughput small RNA sequencing data. Used for integrating analysis of tRNAs, tRNA-derived small RNAs, and tRNA modifications.

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• RRID
• 2 years ago - by Anonymous

Software tool to assist with manually counting objects in images. Used for many conservation applications.

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• RRID
• 2 years ago - submitted by Surabhi Sinha

Software to detect DNA splint sequence raw reads. Computational pipeline for calling consensi on R2C2 nanopore data.

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• RRID
• 2 years ago - by Anonymous

Software for DNA sequence clustering. General purpose DNA sequence clustering tool with strong focus on error correction.

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• RRID
• 2 years ago - by Anonymous

Software Pacbio analysis tool. Deconcat PacBio reads.

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• RRID
• 2 years ago - by Anonymous

Software package to identify transcripts in PacBio single-molecule sequencing data. Scalable De Novo isoform discovery from single-molecule PacBio reads.

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• RRID
• 2 years ago - by Anonymous

Software R package for power calcualtions. Basic functions for power analysis.

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• RRID
• 2 years ago - by Anonymous