Curator Dashboard

Software application for model-based dimensionality reduction of scRNA-seq data. Quantifies uncertainty in each cell's latent position and leverages these uncertainties to assess confidence associated with given cell clustering. On real and simulated single-cell data produces low-dimensional embeddings that better capture relevant biological information while removing unwanted variation. Used for model-based dimensionality reduction for single-cell RNA-seq with generalized bilinear models.

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• RRID
• 2 years ago - by Anonymous

Software R package for dimension reduction of non-normally distributed data. Generalized PCA for non-normally distributed data.

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• RRID
• 2 years ago - by Anonymous

Software R package to analyse overdispersed counts or proportions.

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• SciCrunch
• 2 years ago - by Anonymous

Software C/C++ tool for efficient genotyping bi-allelic SNPs on single cells. You can use cellsnp-lite after read alignment to obtain the snp x cell pileup UMI or read count matrices for each alleles of given or detected SNPs.

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• SciCrunch
• 2 years ago - by Anonymous

Software mutable, self-balancing interval tree for Python 2 and 3. Queries may be by point, by range overlap, or by range containment.

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• SciCrunch
• 2 years ago - by Anonymous

Software tool for ultra fast eQTL analysis via large matrix operations.

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• SciCrunch
• 2 years ago - by Anonymous

Software R package for fitting generalized linear mixed models and extensions, built on Template Model Builder.

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• SciCrunch
• 2 years ago - by Anonymous

Software tools for developing Ordinary Least Squares regression models.

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• RRID
• 2 years ago - by Anonymous

Software R package to detect differential transcript usage from data generated by commonly used polyA-captured scRNA-seq technology.

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• SciCrunch
• 2 years ago - by Anonymous

Software platform and database to manage studies from our in-lab PSG, Alice 6, and portable sleep testing devices, Alice NightOne and Alice PDx.

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• RRID
• 2 years ago - submitted by Tengyu Chen

Advanced, high-throughput digital scanning platform used in cancer immunology and pathology research. It allows scientists to visualize, analyze, quantify, and phenotype immune cells in intact tissue samples. Uses patented multispectral imaging to identify and measure up to nine overlapping biomarkers on a single tissue section or tissue microarray.

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• dkNET
• 2 years ago - by Anonymous

Flow Cytometry Laboratory at Auburn University College of Veterinary Medicine provides operator-managed and assisted support for flow cytometry analyses and high-speed cell sorting.

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• RRID
• 2 years ago - submitted by James Gillespie

Automated, standardized IHC and ISH staining system. Immunohistochemistry and in situ hybridization slide staining system with individual slide drawers.

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• dkNET
• 2 years ago - by Anonymous

Software R package to process and analyse mass spectrometry-based single cell proteomics data.

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• RRID
• 2 years ago - by Anonymous

Versiti Blood Research Institute is national leader in innovative blood health solutions. Provides blood and blood products to hospitals and collects blood annually. Investigators study blood disorders like hemophilia, blood cancers like leukemia, and other blood diseases.

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• RRID
• 2 years ago - submitted by Edyta Vieth

Core forms network of laboratories dedicated to advancing biomedical research by providing access to specialized services, advanced equipment, and expert staff. Services include Bioinformatics, Biorepository, Flow Cytometry, Grant Application Support, Histology, Hybridoma, Microscopy, Molecular and Single Cell Biology, Protein Shared Instrumentation,Thrombosis and Hemostasis, Viral Vector.

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• RRID
• 2 years ago - by Anonymous

Open source hardware-software platform for analyzing reaching movement kinematics in mice. Used for studying fine motor skills in mice performing reach-to-grasp task. Behavioral platform uses readily available and 3D-printed components and was designed to be affordable and universally reproducible. Provides schematics, 3D models, code, and assembly instructions.

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• RRID
• 2 years ago - submitted by Jensen Palmer

Diagnostic sleep system developed by Phillips Respironics. Base station can be paired with LDxS head box for 19 EEG inputs or LDxN for 32 EEG inputs.

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• RRID
• 2 years ago - submitted by Tengyu Chen

Software tools for single-cell data processing.

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• SciCrunch
• 2 years ago - by Anonymous

Software allele-specific pipeline for unbiased read mapping and molecular QTL discovery. Allele-specific software for robust molecular quantitative trait locus discovery.

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• SciCrunch
• 2 years ago - by Anonymous