Curator Dashboard

Software R package for deconvolution of mixed cells from spatial and/or bulk gene expression data. Algorithm for quantifying cell populations defined by single cell sequencing within regions of spatial gene expression studies. Used for mapping cell types in spatial gene expression studies.

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• RRID
• 1 year ago - by Anonymous

The Andrew W. Mellon Foundation currently makes grants in five core program areas: * Higher Education and Scholarship * Scholarly Communications and Information Technology * Art History, Conservation, and Museums * Performing Arts * Conservation and the Environment Within each of its core programs, the Foundation concentrates most of its grantmaking in a few areas. Institutions and programs receiving support are often leaders in fields of Foundation activity, but they may also be promising newcomers, or in a position to demonstrate new ways of overcoming obstacles to achieve program goals. Our grantmaking philosophy is to build, strengthen and sustain institutions and their core capacities, rather than be a source for narrowly defined projects. As such, we develop thoughtful, long-term collaborations with grant recipients and invest sufficient funds for an extended period to accomplish the purpose at hand and achieve meaningful results.

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• SciCrunch
• 15 years ago - by Anonymous

Web tool for exploring variants in islet expression quantitative trait loci. Data is result of collaboration between Michigan University Parker lab, Department of Biostatistics and Center for Statistical Genetics at University of Michigan, National Human Genome Research Institute, Jackson Laboratory for Genomic Medicine, Department of Genetics at University of North Carolina, European Bioinformatics Institute, Department of Preventive Medicine at University of Southern California, and Department of Physiology and Biophysics at University of Southern California.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core provides full service genomics and Next Generation sequencing. Specializes in microbial sequencing.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Bioinformatics Resource Center for invertebrate vectors. Provides web-based resources to scientific community conducting basic and applied research on organisms considered potential agents of biowarfare or bioterrorism or causing emerging or re-emerging diseases.

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• SciCrunch
• 17 years ago - by Anonymous

Web server provides functional and structural information about proteins from their evolutionary record using methods from statistical physics. Computes evolutionary couplings from sequence alignments and predicts 3D structure for your protein of interest. Allows to run former EVcouplings, EVmutation, EVfold and EVcomplex jobs.

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• RRID-Legacy
• 6 years ago - by Anonymous

High-performance computing facility. Its resources have been designed to support labs engaged in genetics and bioinformatics research, but are open to anyone on campus. The Stanford SCG Bioinformatics Cluster is optimized to support large memory, single-node threaded applications as well as applications and workflows that require many small files.

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• RRID
• 1 year ago - submitted by A. Karl Kornel

One of eight Bioinformatics Resource Centers nationwide providing comprehensive web-based genomics resources including a relational database and web application supporting data storage, annotation, analysis, and information exchange to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. These centers serve the scientific community and conduct basic and applied research on microorganisms selected from the NIH/NIAID Category A, B, and C priority pathogens that are regarded as possible bioterrorist threats or as emerging or re-emerging infectious diseases. The VBRC provides a variety of analytical and visualization tools to aid in the understanding of the available data, including tools for genome annotation, comparative analysis, whole genome alignments, and phylogenetic analysis. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.

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• SciCrunch
• 16 years ago - by Anonymous

Web application for data storage and analysis to explore brain tumors datasets from Chinese cohorts. Data portal for storage and interactive exploration of multi-dimensional functional genomic data that includes primary and recurrent glioma samples from Chinese cohorts. Allows users to browse DNA mutation profile, mRNA/microRNA expression profile and methylation profile, and to do correlation and survival analysis in specific glioma subtype.

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• RRID-Legacy
• 6 years ago - by Anonymous

Catalogue enables users to search for H3Africa datasets or biospecimens of interest. Catalogue is updated periodically with metadata from studies submitted to H3Africa Archive and corresponding biospecimen metadata uploaded from following biorepositories: IBRH3AU: Makerere University, Uganda; IHVN: Institute of Human Virology, Nigeria; CLS: University of the Witswatersrand School of Pathology, South Africa.

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• RRID
• 1 year ago - by Anonymous

Provides standardized vocabulary of phenotypic abnormalities encountered in human disease. Structured and controlled vocabulary for phenotypic features encountered in human hereditary and other disease. HPO is being developed in collaboration with members of OBO Foundry (Open Biological and Biomedical Ontologies), and logical definitions for HPO terms are being developed using PATO and a number of other ontologies including FMA, GO, ChEBI, and MPATH.

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• SciCrunch
• 15 years ago - by Anonymous

Core provides services for Molecular Modeling, Biophysical Techniques, X-ray Crystallography, Protein Production,High Throughput Screening. Provided instruments to use after reservation include Clariostar Multimode Plate Reader, Echo 550 Acoustic Liquid Handler, X-Ray Diffractometer.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software package that provides client interface to Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Client-side REST access to KEGG.

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• RRID
• 1 year ago - submitted by Dongjun Han

The Foundation is dedicated to advancing environmental conservation, scientific research, and patient care, as well as helping to improve quality of life in the San Francisco Bay Area--Gordon and Betty Moore''s home for more than 70 years. The Foundation is devoted to the inspirational vision articulated by our founders: creating positive outcomes for future generations. This vision guides our mission: to achieve significant, lasting and measurable results in environmental conservation, science, patient care, and the San Francisco Bay Area. A set of core valuesimpact, integrity, disciplined approach, and collaborationdirects our work. The Foundation carries out its work through the following frameworks: * Programs. The enduring management unit designed to achieve transformational change in a selected field of interest through a portfolio of integrated interventions. * Initiatives. Initiatives are built around well-developed strategies for concentrated investments, focused on the long-term and achieving significant impact. Initiatives are characterized by a portfolio approach to grantmaking, and other engagements of the Foundation, to pursue ambitious, large-scale outcomes. * Program grants. The Foundation devotes some of its grantmaking to experimentation, focused innovation, and agile response to time-sensitive, high-impact opportunities in its areas of focus. Across all initiatives and program grants, the Foundation''s grantees and partners seek to make positive changes in the world. The Foundation''s headquarters are in Palo Alto, in a building renovated with an emphasis on the environment and sustainability.

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• SciCrunch
• 15 years ago - by Anonymous

Group of academic institutions committed to studying diabetic foot conditions, such as foot ulcers and wound healing, to develop predictive biomarkers which can be later used to create better treatment plans and improve health and quality of life for people living with diabetes.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Project portal to collect, preserve, and exchange local observations and Indigenous Knowledge. Collaborates with Arctic communities and Indigenous organizations, schools, and researchers to create customized data management products. ELOKA provides open and tailored data access, data stewardship for Indigenous communities, and services ranging from advising on data sharing ethics and protocols to handling different data types. Interactive digital atlases showcasing community-based observations of social and environmental change and related geospatial data, such as trail locations, place names, land-use demarcations, or local climate information. Customized websites containing cultural, historical, and/or environmental information significant to partner communities, often in the form of written interview transcripts, audio or video files, photographs, artwork, illustrations, and maps. Data sets of environmental and wildlife observations collected by Indigenous experts. Access to local weather station data, including temperature, snow thickness, and wind data.

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• RRID
• 1 year ago - submitted by Anita Bandrowski

The CreZOO database is the European virtual repository of Cre and other targeted conditional driver strains. CreZOO is being developed in the context of the CREATE consortium, a core of major European and international mouse database holders and research groups involved in conditional mutagenesis. Its aim is to capture and disseminate extant and new information on Cre driver strains. CreZOO also aims to contribute data to the CREATE portal for worldwide access of related information. All transgenic strains carry detailed information on the promoter, specificity (using Adult Mouse Anatomy terms and Theiler Stages) and expressed gene(s) including IDs and direct links where available. Allele details are also presented, in addition to strain, background and availability (in the form of live mice, cryopreserved embryos or sperm etc) information (including EMMA, MGI, MMRRC etc hyperlinks where available). Handling and genotyping details (in the form of documents or hyperlinks) together with all relevant publications are clearly presented with PMID(s) and direct PubMed links.

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• SciCrunch
• 15 years ago - by Anonymous

Repository of sequenced antibodies, integrating curated information about antibody and its antigen with cross links to standardized databases of chemical and protein entities. Manually curated repository of sequenced antibodies, developed by Geneva Antibody Facility at University of Geneva, in collaboration with CALIPHO and Swiss Prot groups at SIB Swiss Institute of Bioinformatics. Database provides list of sequenced antibodies with their known targets. Each antibody is assigned unique ID number that can be used in academic publications to increase reproducibility of experiments.

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• rapid-viraldb
• 6 years ago - submitted by Mia Jeffris

Multidisciplinary data generation project which aims to create and share multimodal dataset optimized for artificial intelligence research in type 2 diabetes. At each release of the AI-READI dataset, two sets will be made available: public access and controlled access set. The public set will be stripped of Protected Health Information (PHI) as well as information related to the sex and race/ethnicity of the participants.

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• dkNET
• 1 year ago - submitted by Ko-Wei Lin

A web utility providing a direct interface to perform SQL queries directly on the GO database, allowing users to run custom queries without having to install a copy of the GO database locally. GOOSE includes many sample queries to aid novice users and allows results to be retrieved as a web page or as tab-delimited text. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible

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• SciCrunch
• 15 years ago - by Anonymous