Curator Dashboard

Microsoft Excel Macro that automatically calculates and reports assay parameters of the Seahorse XF Cell Mito Stress Test as absolute Oxygen Consumption Rate in pmol O2/min and supports assay result data from all Agilent Seahorse XF Analyzers.

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• 1 year ago - by Anonymous

Core provides centralized support, systems, and services for IT specific to research. Systems and services include areas of high-performance computing, virtual machine hosting, large scale storage, and high-performance networking and data transfer.Provides MSU researchers with consulting on technology budgets and implementation for grants and support for IT components of major research instrumentation, software, and specialized or unique research technology needs.

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• 1 year ago - submitted by Edyta Vieth

Interactive website for cancer statistics using California Cancer Registry data. Provides detailed statistics for cancer site by gender, race/ethnicity, age, county/region, and for select number of cancer sites, by histology.

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• 1 year ago - by Anonymous

Open source software for chromatography, spectrometry and spectroscopy. Data from different systems can be imported and analyzed. Runs under Windows, macOS and Linux. Supports to handle GC/MS, GC/FID, HPLC-UV/VIS, FTIR, PCR and NMR data.

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• 1 year ago - by Anonymous

Free file manager, SSH File Transfer Protocol, File Transfer Protocol, WebDAV, Amazon S3, and secure copy protocol client for Microsoft Windows.

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• 1 year ago - by Anonymous

Database that provides access to organic compounds data compiled and distributed by NIST under the Standard Reference Data Program.

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• 1 year ago - by Anonymous

Web-based application for automated structural classification of chemical entities. Automated chemical classification with a comprehensive, computable taxonomy. Provides hierarchical chemical classification of chemical entities as well as structure-based textual description, based on chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds.

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• 1 year ago - by Anonymous

Software extension of t-distributed stochastic neighbor embedding, the spatially resolved t-SNE (SpaSNE) designed to preserve both global gene expression and spatial structure for spatially resolved profiling data. Gives comprehensive low-dimensional visualization that could best reflect the molecular similarities of cells and the spatial interactions between cells.

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• 1 year ago - submitted by Chen Tang

Software collection consisting of Python-based framework for connectome-based analysis using Ray to parallelize CPM and set of scripts to perform common operations and analyses on the Human Connectome Project's neuroimaging data with focus on task-based fMRI.

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• 1 year ago - submitted by Tobias Bachmann

Software tool for calling and analyzing SNVs from spatial transcriptomics data.

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• 1 year ago - submitted by Yi Liu

IPD2 is updated version of InfectiousPathogenDetector, in-silico GUI-based automated pathogen analysis pipeline for seamless analysis of data from heterogenous NGS platforms. IPD performs integrated variants analysis, along with systematic quantification of pathogen genomes. IPD additionally has an in-built SARS-CoV-2 analysis module, for assignment of viral clades of the samples analyzed and an automated report generation.

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• 1 year ago - by Anonymous

Core performs standard-of-care and advanced molecular testing for patients with cancer, and to provides special expertise in solid tumors. Services include targeted gene sequencing, microsatellite instability testing, fluorescence in situ hybridization (FISH), and next-generation sequencing (NGS). CCGL is staffed with board-certified surgical pathologists and board-certified molecular pathologists who can properly evaluate the quality of samples submitted for testing as well as make correlations between the pathologic diagnosis of a tumor and the molecular findings in the tumor.

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• 1 year ago - by Anonymous

Community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research. Cancer classification system for precision oncology.

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• 1 year ago - by Anonymous

International data-sharing consortium focused on generating an evidence base for precision cancer medicine by integrating clinical-grade cancer genomic data with clinical outcome data of cancer patients treated at multiple institutions worldwide.

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• 1 year ago - by Anonymous

Web-based framework that serves the dual-purpose of being content repository for tRFs and tool for interactive exploration of these newly discovered molecules. Framework for interactive exploration of mitochondrial and nuclear tRNA fragments. Can report comparative information on how tRF is distributed across all anticodon/amino acid combinations, provides alignments between tRNA and multiple tRFs with which user can interact, provides details on published studies that reported tRF as expressed.

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• 1 year ago - by Anonymous

Software tool to embed scRNA-seq data into species-agnostic latent space to overcome batch effect and identify cell states shared between species. Deep learning algorithm for cross-species integration of scRNA-seq data.

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• 1 year ago - by Anonymous

Core provides Untargeted Metabolomics, Untargeted Lipidomics, Targeted Metabolomics, Metabolomics Flux and analysis services.

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• 1 year ago - by Anonymous

Protein characterization system that automated the Western blotting process from protein separation, immunoprobing, detection, and analysis of data.Gel-free, blot-free, and hands-free. It used glass rods and tubes to form a column that separated proteins by molecular weight. The Wes system was discontinued on July 30, 2021, but ProteinSimple will continue to support the platform through July 30, 2026. Users can upgrade to Jess or Abby to get the functionality of Wes with additional features.

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• 1 year ago - by Anonymous

HCP Suite is (1) a Python-based framework for connectome-based analysis (CPM) using Ray to parallelize CPM which has become the main focus of this project and (2) a set of scripts to perform common operations and analyses on the Human Connectome Project's neuroimaging data with a focus on task-based fMRI

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• 1 year ago - submitted by Tobias Bachmann

Immortalized Human Astrocytes-SV40T have been obtained immortalizing Human Cortical Astrocytes with SV40LT expressing lentiviral particles. Immortalized cells were controlled passaging side by side with the primary cells. Primary cells go into senescence after the 5th passage while the SV40tranduced cells go beyond 30 passages.

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• 1 year ago - submitted by Hannah Cole