Curator Dashboard

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 9,2024. Six component core which facilitates the exchange of research information and discussions among investigators, fellows and students within the Joslin Diabetes Center, as well as between Joslin Staff and outside researchers with similar interests.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Open source, adaptable tracking system for multiple rodents. Scalable and customizable system for tracking and behavior assessment consists of Raspberry Pi based video and RFID acquisition. Maximum of six rodents of any coat color can be tracked simultaneously in any user defined arena with few restrictions. For pose estimation and travel trajectory analysis, PyMouseTracks supports interfacing with open source packages such as DeepLabCut and Traja.

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• RRID
• 3 years ago - submitted by Samantha White

Genome of Takifugu, the Japanese puffer fish. The Fugu genome was sequenced and assembled using the whole genome shotgun method.

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• SciCrunch
• 17 years ago - by Anonymous

Research center for translational research on type 2 diabetes with a strong emphasis on translation into real world health care settings and communities.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Hosts makerspaces, labs, and promotes design based frameworks toward iteration and innovation. Acts as open intersection of university departmental collaboration and provides access to low barrier prototyping tools. Supports FSU student, staff, and faculty research initiatives.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software toolkit that provides the following libraries and functions on linux platform: # Multi-resolution registration of MR images include T1, multimodality, and DTI images. # The registration model is B-spline, and users can custermize their own image similarity measures by writing a plugin function and recompile the program.

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• SciCrunch
• 14 years ago - by Anonymous

Core whose focus is on modern approaches to the study of the human immune system and their application to the study of IBD and related disorders. Its services include routine immunology tools, specialized immunology services, and education and training services.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Provides preclinical Magnetic Resonance Imaging technology and expertise to Stanford community. Offers range of support from full project to independent user operation and training.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software system to assist computational neuroscientists in interacting with databases of models and with neural simulation packages such as GENESIS. There are three components in the system: a user interface, a database server, and a global registry and repository. The collection of software tools with a graphical user interface enables users to interact over the WWW with databases of models and data. It provides facilities for searching multiple remote databases for model components based on various criteria; visualizing the characteristics of the components retrieved; creating new components, either from scratch or derived from existing models; combining components into new models; linking models to experimental data as well as online publications; and interacting with simulation packages such as GENESIS to simulate the new constructs. Although the initial version uses GENESIS as the simulator, the design permits the use of multiple simulation systems, with or without the use of a database. This allows modeling at multiple levels of scale from the molecular level, through the subcellular (e.g. ion channel), single cell, and network levels, to the systems level (e.g. relating models to fMRI studies). The system is intended to help users create and organize models and to interact with databases of models and neuronal simulation software. More specifically, the Modeler's Workspace is designed to provide the following: * Search and retrieval facilities for interacting with databases of models and other information; * Facilities for creating, editing and visualizing the characteristics of models; * Facilities for combining model components together and translating them into formats suitable for simulation systems such as GENESIS and NEURON; * Facilities for managing a personal database where a user can collect models and other objects; and * Collaboration facilities for connecting one or more users together, to allow them to simultaneously edit objects in a shared database and communicate with each other using real-time chat. The Modeler's Workspace is written in Java for portability and extensibility. It is modular in design and uses pluggable components for supporting different data formats, which means that new data types can be supported by loading an appropriate plug-in. To increase the probability that the Modeler's Workspace will be compatible with future databases and tools, they are using the eXtensible Markup Language (XML) as the interchange format for communicating with databases.

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• SciCrunch
• 16 years ago - by Anonymous

Core that provides quantitation and identification of protein changes by 2D gel-based methods and isotope tagging and nanoLC-MS/MS, identification of protein biomarkers detected from biofluids in the Biomarker Core, and provision of dedicated and expert Biostatistical and Bioinformatic support for data analysis.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Provides resources and services to support business related research and teaching at Stanford University. As part of GSB Research Hub, helps foster scholarship, teaching, and innovation by committing to access, dissemination, creation, and preservation of information and knowledge.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software providing a set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27,2022. Core facility that provides space for freezers used to store research samples, offers assistance with evaluating the space and power needs for new freezers, provides information on best practices, and provides access and allocates space in the shared freezer facility.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Offers clinical laboratory services including hematology, cytology, serum chemistry, electrolyte analysis, coagulation profiles, fluid analysis, serology/immunology, parasitology, and microbiology; Specializes in diagnostic and research needs of laboratory animals. Committed to improving diagnostics, developing additional reference ranges for various clinical pathology parameters in laboratory animals, and supporting health surveillance and disease management.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A Bioconductor package integrating algorithms to extract compound spectra, annotate isotope and adduct peaks, and propose the accurate compound mass even in highly complex data.

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• SciCrunch
• 12 years ago - by Anonymous

Core that provides a central focus to translate the findings from clinical and cellular studies to applications in ongoing epidemiologic studies.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Academic cost recovery center, operates number of HPC clusters to enable larger simulations, deeper analyses, and faster computation times than are possible using computers available to individual researchers. Provides mass data storage and archival systems to store data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A package for writing fMRI analysis pipelines and interfacing with external analysis packages (SPM, FSL, AFNI). Current neuroimaging software offer users an incredible opportunity to analyze their data in different ways, with different underlying assumptions. However, this has resulted in a heterogeneous collection of specialized applications without transparent interoperability or a uniform operating interface. Nipype, an open-source, community-developed initiative under the umbrella of Nipy, is a Python project that solves these issues by providing a uniform interface to existing neuroimaging software and by facilitating interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages (e.g., SPM, FSL), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems.

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• SciCrunch
• 14 years ago - by Anonymous

Source code for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. It was originally designed for processes observed at arbitrary times in continuous time but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software R package to work with date-times and time-spans. Used for fast and user friendly parsing of date-time data, extraction and updating of components of date-time, algebraic manipulation on date-time and time-span objects.

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• RRID
• 3 years ago - by Anonymous